Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,030,254 – 4,030,386 |
Length | 132 |
Max. P | 0.998598 |
Location | 4,030,254 – 4,030,350 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.90 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -26.06 |
Energy contribution | -26.10 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.89 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4030254 96 - 22224390 UUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACGUUGGGAUCUGCUAACUUCUUCUUCUGCCUUCCUGUUAUGUUUCACUAUUUUUC .(((((((((((((((((.(....).)))))))))..)))..(((((......)))))..............)))))................... ( -29.20) >DroSec_CAF1 44013 93 - 1 UUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC---UUCUGCCUUCCUGUUAUGUUCCACUAUUUUUC .(((((((((((((((((.(....).)))))))))..)))((((.((((...((.......---....))..))))...)))).)).)))...... ( -30.90) >DroSim_CAF1 40250 93 - 1 UUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC---UUCUGCCUUCCUGUUAUGUUCCACUAUUUUUC .(((((((((((((((((.(....).)))))))))..)))((((.((((...((.......---....))..))))...)))).)).)))...... ( -30.90) >DroEre_CAF1 43757 93 - 1 UUAGGGGCGUGUCAGCCCCGGCAACAGUGUUGCUAACCGCACAUUGGGAUCUGCUGACUUC---UUCUGCCUUCCUGUUAUGUUUCACUAUUUUUC ...(((((......)))))((((.((((((.((.....))))))))(((((....)).)))---...))))......................... ( -25.90) >DroYak_CAF1 42447 93 - 1 UAAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUGACUUC---UUCUGCCUUCCUGUUAUGUUUCACUACUUUUC .(((((((((((((((((.(....).)))))))))..)))((((.((((...((.((....---.)).))..))))...)))).......))))). ( -29.90) >consensus UUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC___UUCUGCCUUCCUGUUAUGUUUCACUAUUUUUC .(((((((((((((((((.(....).)))))))))..)))((((.((((...((..............))..))))...)))).)).)))...... (-26.06 = -26.10 + 0.04)
Location | 4,030,278 – 4,030,386 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -32.70 |
Energy contribution | -33.26 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.53 |
Structure conservation index | 0.90 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4030278 108 - 22224390 AAAACAGCAACAAUGUGUCUGGGUCGUGAAGGCAUUUUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACGUUGGGAUCUGCUAACUUCUUCUUCUGCCU .....((((.((((((((....(((.....))).......((...(((((((((.(....).))))))))).)))))))))).....))))................. ( -35.70) >DroSec_CAF1 44037 105 - 1 AAAACAGCAACAAUGUGUCUGGGACGUGAAGGCAUUUUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC---UUCUGCCU .....((((.((((((((((((((.((....)).))))))((...(((((((((.(....).))))))))).)))))))))).....))))......---........ ( -36.70) >DroSim_CAF1 40274 105 - 1 AAAACAGCAACAAUGUGUCUGGGACGUGAAGGCAUUUUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC---UUCUGCCU .....((((.((((((((((((((.((....)).))))))((...(((((((((.(....).))))))))).)))))))))).....))))......---........ ( -36.70) >DroEre_CAF1 43781 105 - 1 AAAGCAGCUACAAUGUGUCUAGGACGUGAAGGCAUUUUAGGGGCGUGUCAGCCCCGGCAACAGUGUUGCUAACCGCACAUUGGGAUCUGCUGACUUC---UUCUGCCU ..(((((...((((((((...((................(((((......)))))((((((...))))))..))))))))))....)))))......---........ ( -35.70) >DroYak_CAF1 42471 105 - 1 AAAACAGCAACAAUGUGUCUGGGACGUGAAGGCAUUUAAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUGACUUC---UUCUGCCU ....(((((.((((((((((..((.((....)).))..))((...(((((((((.(....).))))))))).)))))))))).....))))).....---........ ( -37.20) >consensus AAAACAGCAACAAUGUGUCUGGGACGUGAAGGCAUUUUAGGGGCGUGGCAGCACCGGCAACAGUGUUGCCAACCGCACAUUGGGAUCUGCUAACUUC___UUCUGCCU .....((((.((((((((((((((.((....)).))))))((...(((((((((.(....).))))))))).)))))))))).....))))................. (-32.70 = -33.26 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:02 2006