Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,029,921 – 4,030,031 |
Length | 110 |
Max. P | 0.871625 |
Location | 4,029,921 – 4,030,031 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 90.40 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -24.62 |
Energy contribution | -25.74 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.76 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4029921 110 + 22224390 GUCAGCGGAAACCGGAAGCCGCAACUGCCAGAGUUGCCACACCUAACUGUGUCGCAAAAAUGACUC-GCAGCAAAAUGCGACACAUUCUGGACGGUUAUAAAGGAAAGCUU ....((((....(....)))))((((((((((.((((.((((......)))).))))..(((..((-(((......)))))..)))))))).))))).............. ( -33.90) >DroSec_CAF1 43691 104 + 1 GUCAGCGGAAACCGGAAGCCGCAACUGCCAGAGUUGCCACACCUAACUGUGUCGCAAAAAUGACUCGGCAGCAAAAUG-GACACAU-CUUGACG----UAAAAGCAAGCU- (((.((((....(....)))))..(((((.(((((((.((((......)))).)))......))))))))).......-)))....-((((.(.----.....)))))..- ( -30.40) >DroSim_CAF1 39918 110 + 1 GUCAGCGGAAACCGGAAGCCGCAACUGCCAGAGUUGCCACACCUAACUGUGUCGCAAAAAUGACUC-GCAGCAAAAUGCGACACAUUCUGGACGGUUAUAAAGGAAAGCUU ....((((....(....)))))((((((((((.((((.((((......)))).))))..(((..((-(((......)))))..)))))))).))))).............. ( -33.90) >DroEre_CAF1 43425 110 + 1 GUCAGCGGAAACCGGAAGCCGCAACUGCCAGAGUUGCCACACCUAAUUGUGUCGCAAAAAAGAAUC-GCAGCAAAAUGCGACACAUUCUGGGUGGUUAUAAAGGAACGUUU ...((((.....(....)((((((((.....))))))..((((((..(((((((((..........-.........)))))))))...))))))........))..)))). ( -33.21) >DroYak_CAF1 42121 110 + 1 AUCAGCGGAAACCGGAAGCCGCAAAUGCCAGAGUUGCCACACCUAACUGUGUUGCAAAAAUGACUC-GCAGCUAAAUGCGACACAUUCUGGUCGCUUAUAUAGAAACGUUU .((.((((....(....)))))....((((((.((((.((((......)))).))))..(((..((-(((......)))))..)))))))))..........))....... ( -29.80) >consensus GUCAGCGGAAACCGGAAGCCGCAACUGCCAGAGUUGCCACACCUAACUGUGUCGCAAAAAUGACUC_GCAGCAAAAUGCGACACAUUCUGGACGGUUAUAAAGGAAAGCUU ....((((....(....)))))((((((((((((((.......))))(((((((((....((......))......))))))))).))))).))))).............. (-24.62 = -25.74 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:00 2006