Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,029,529 – 4,029,625 |
Length | 96 |
Max. P | 0.596241 |
Location | 4,029,529 – 4,029,625 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.09 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -14.10 |
Energy contribution | -13.22 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.25 |
Mean z-score | -1.38 |
Structure conservation index | 0.81 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4029529 96 + 22224390 AAUUGAAGAACAGUGACCGCAAAAUCCAAAUGCCAAAAUUUGACUAAUCGGUCAAAGUUGAAAAUGGACAUGA-GAUCGGAUUCCAAGUCCGAAGCA ........(((..((((((.......(((((......)))))......))))))..))).....(((((.((.-((......)))).)))))..... ( -21.52) >DroSec_CAF1 43297 94 + 1 AAUUGAAGGACAGUGACCGCAAAAUGCAAAUGCCAAAAUUUGACCGAUUA--CAAAGUUGGAAAUGGACAUGA-GAUCGGAUUACCAGUCUGAAGCA .......((((.(((((((....((((((((......))))).((((((.--...)))))).......)))..-...))).))))..))))...... ( -17.50) >DroSim_CAF1 39520 94 + 1 AAUUGAAGGACAGUGACCGCAAAAUGCAAAUGCCAAAAUUUGACCGAUUA--CAAAGUUGGAAAUGGACAUGA-GAUCGGAUUACCAGUCUGAAGCA .......((((.(((((((....((((((((......))))).((((((.--...)))))).......)))..-...))).))))..))))...... ( -17.50) >DroEre_CAF1 43060 77 + 1 ------------------GCAAAAUGCAAAUGCCAAAUUUUGGCCGAUUA--CAAAGUUGAAAAUGGACAUGAGGAUCGGAUUAACAGUCUGAAGCA ------------------......(((..(((((((((((((........--))))))).....))).))).....((((((.....)))))).))) ( -15.20) >DroYak_CAF1 41762 76 + 1 ------------------GCAAAAUGCAAAUGCCAAAUUUUAACCGAUUA--CAAAGUUGAAAAUGGACAUGA-AAUCAGAUUACCAGUCUGAAGCA ------------------......(((..((((((..(((((((......--....))))))).))).)))..-..((((((.....)))))).))) ( -15.10) >consensus AAUUGAAG_ACAGUGACCGCAAAAUGCAAAUGCCAAAAUUUGACCGAUUA__CAAAGUUGAAAAUGGACAUGA_GAUCGGAUUACCAGUCUGAAGCA ..................((.........((((((...((((((............))))))..))).))).....((((((.....)))))).)). (-14.10 = -13.22 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:59 2006