Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,019,054 – 4,019,152 |
Length | 98 |
Max. P | 0.689534 |
Location | 4,019,054 – 4,019,152 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -12.02 |
Energy contribution | -12.77 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4019054 98 - 22224390 AAGAAAGAAAAAAAACCGGGAAUGGAGCGAGAACUG-GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUAGC ...............(((....)))((((....(((-.((...((((((((((((..................)))))))))))).))))).))))... ( -17.97) >DroSec_CAF1 33173 96 - 1 A--AAGGAGGAAAAAACGGGAAAGGAGCGAGAACUG-GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUGGC .--.......................((.((.....-(((...((((((((((((..................)))))))))))).))).....)).)) ( -17.57) >DroSim_CAF1 32099 96 - 1 A--AAGGAGGAAAAAACGGGAAAGGAGCGAGAACUG-GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUGGC .--.......................((.((.....-(((...((((((((((((..................)))))))))))).))).....)).)) ( -17.57) >DroEre_CAF1 31834 85 - 1 -------------AACCGAAGAGGGAGCGAGAACUG-GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUGAC -------------..((.....)).((((....(((-.((...((((((((((((..................)))))))))))).))))).))))... ( -18.07) >DroWil_CAF1 41516 94 - 1 ---UGGGGGGAGAUAAAAGCAAAGCGGAGACAACAGAGUAAAAGAUAUUUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUCCCUACACU--GUC ---..((((((((((...(((..(((....)......(((((((...)))))))................)).)))...)))))))))).....--... ( -21.00) >DroYak_CAF1 31539 85 - 1 -------------AACUUGGAAGGGAGCGAGAACUG-GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUGAC -------------.........(..((((....(((-.((...((((((((((((..................)))))))))))).))))).))))..) ( -16.47) >consensus ___AAGGAGGAAAAAACGGGAAAGGAGCGAGAACUG_GCGAAUGAGAUAUUUGCAAUAAAAGUAUAAACAGCAUGCAAAUAUUUUGCGUAGACGCUGGC .........................((((....(((.((((....((((((((((..................)))))))))))))).))).))))... (-12.02 = -12.77 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:56 2006