Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 523,551 – 523,671 |
Length | 120 |
Max. P | 0.718901 |
Location | 523,551 – 523,671 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -25.98 |
Energy contribution | -28.42 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.72 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 523551 120 - 22224390 CCAACUGUUUCGUUGGUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU ((..((((((((((((.........)))))))(((((((.((((((.(..(((....)))..)))))))....)))))))...)))))((((............))))..))........ ( -41.10) >DroSec_CAF1 10007 120 - 1 CCAACUGUUUCGUUGUUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGUAAGUGCAGCCAUUGGAGCAAGUGCCAUACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU ((....(((((((((((.....((((......(((((((.((((((.(..(((....)))..)))))))....))))))).......))))...)))))))))))(....)..))..... ( -37.42) >DroSim_CAF1 10388 120 - 1 CCAACUGUUUCGUUGUUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCAUACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU ((....(((((((((((.....((((......(((((((.((((((.(..(((....)))..)))))))....))))))).......))))...)))))))))))(....)..))..... ( -39.62) >DroEre_CAF1 9395 107 - 1 CCAACCGUUUCUUUGGUAGUGGCGCCCAACUAGUGGCGCGUCCAGUUGAAUGC----------UCU---GCGAGUGCCACACAAACAGGCGAAAAACAAUGAAAGCGCAAGGAGGAAGCC ......((((((((....((..((((......(((((((.(((((........----------.))---).))))))))).......))))....))........(....))))))))). ( -31.42) >DroYak_CAF1 8817 110 - 1 CCAACUACUCCUUUGGUAGUGGCGCCUAAAGAGUGGCGCGUCCAAUUGAAUGC----------AUUGGAGCAAGUGGCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCC .......((((((.....((((((((........))))).((((((.......----------))))))((.....)).)))......((((............))))))))))...... ( -30.60) >consensus CCAACUGUUUCGUUGGUAAUGGCGCCCAACGAGUGGCGCGUCCAAUUGAAUGCAAGUGCAGCCAUUGGAGCAAGUGCCACACAAACAGGCGAAAAACAAUGAAAUCGCAAGGAGGAAGCU ((....(((((((((.......((((......(((((((.((((((....(((....)))...))))))....))))))).......)))).....)))))))))(....)..))..... (-25.98 = -28.42 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:48 2006