Locus 1339

Sequence ID X_DroMel_CAF1
Location 4,018,358 – 4,018,468
Length 110
Max. P 0.765316
window2137

overview

Window 7

Location 4,018,358 – 4,018,468
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 90.68
Mean single sequence MFE -14.90
Consensus MFE -11.92
Energy contribution -12.60
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -1.62
Structure conservation index 0.80
SVM decision value 0.51
SVM RNA-class probability 0.765316
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4018358 110 - 22224390
UGAAUUUCCAUCUCCACAAUUACACAAUAACAAACACUUGCGCGGUCAAUCAAGCCAGCAAUUGCUGCUCUCAACAAUUUGCAGCAGUCUAAUAUAUCUAUACAUUUAAC
..................((((.((............((((..(((.......))).)))).((((((............)))))))).))))................. ( -16.60)
>DroSec_CAF1 32530 110 - 1
CGAAUUUCCAUCUCCACAAUUACACAAUAACAAACACUUGCUCGGUCAAUCAAGGCAGCAAUUGCUGCUCUCAACAAUUUGCAGCAGUCUAAUAUAUCUAUACAUUUAAC
..................((((.((............(((((..(((......)))))))).((((((............)))))))).))))................. ( -16.00)
>DroSim_CAF1 31396 110 - 1
CGAAUUUCCAUCUCCACAAUUACACAAUAACAAACACUUGCUCGGUCAAUCAAGGCAGCAAUUGCUGCUCUCAACAAUUUGCAGCAGUCUAAUAUAUCUAUACAUUUAAC
..................((((.((............(((((..(((......)))))))).((((((............)))))))).))))................. ( -16.00)
>DroEre_CAF1 31117 104 - 1
CGAAUUUCCAU--CCACAAUUCCACAACAA----CACUUGCUCAGUCAAUCAAGGCAGCAAUUGUUACUCUCAACAAUUUCCAGCAGUCUAAUAUUUCUACACAUUUGAC
.(((((.....--....)))))......((----((.(((((..(((......)))))))).))))............................................ (  -9.40)
>DroYak_CAF1 30845 104 - 1
CGAAUUUCCAU--CCACAGUUACACAAUAA----CACUUGCUUAGUCAAUCAAGGCAGCAAUUGCUGCUCUCAACAAUUUGCAGCAGUCUAAUAUUUCUUCACAUUUAAC
.(((.......--.....((((.....)))----)...((((..(((......)))))))((((((((............))))))))..........)))......... ( -16.50)
>consensus
CGAAUUUCCAUCUCCACAAUUACACAAUAACAAACACUUGCUCGGUCAAUCAAGGCAGCAAUUGCUGCUCUCAACAAUUUGCAGCAGUCUAAUAUAUCUAUACAUUUAAC
..................((((.((............(((((..(((......)))))))).((((((............)))))))).))))................. (-11.92 = -12.60 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:55 2006