Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,000,845 – 4,000,959 |
Length | 114 |
Max. P | 0.909201 |
Location | 4,000,845 – 4,000,959 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.21 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -19.36 |
Energy contribution | -19.36 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.65 |
Structure conservation index | 0.84 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4000845 114 + 22224390 AUUGGUUGCUUUCAUGUGAAGCCUGUUAACGAUUUUAACGACAAAAUGU---CCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUCGAA ....(((((((((((((((((((.(((((((........(((.....))---)))))))).).)))))))))))))....)))))................................ ( -23.00) >DroSec_CAF1 22566 115 + 1 AUUGGUUGCUUUCAUAUGAAGCCUGUUAAC-AUUUUAACGACAAGUUGUCGUUCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC-AA ....(((((((((((((((((((.((((((-.....((((((.....)))))).)))))).).)))))))))))))....))))).............................-.. ( -27.10) >DroSim_CAF1 20891 115 + 1 AUUGGUUGCUUUCAUAUGAAGCCUGUUAAC-AUUUUAACGACAAGUUGUCGUCCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC-AA ....(((((((((((((((((((.((((((-......(((((.....)))))..)))))).).)))))))))))))....))))).............................-.. ( -25.90) >DroEre_CAF1 20715 111 + 1 AUUGGUUGCUUUCAUGUGAAGCCUGUUAAC-AUUUUAACGACAACUUGU---CCGUUGAUUGCGUUUUAUGUGAAAUAAUGUAACAAUUAAAAAUCAUU-AUUUUCCUCUUUUG-AA ....((((((((((((((((((.((((((.-...)))))).((((....---..)))).....)))))))))))))....)))))..............-..............-.. ( -20.30) >DroYak_CAF1 20619 111 + 1 AUUGGUUGCUUUCAUGUGAAGCUUGUUAAC-AUUUUAACGACAACUUGU---CCGUUGAUUGCAUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUU-AUUUUCCUCUUUUG-AA ....(((((((((((((((((((((((((.-...)))))))((((....---..))))...))..)))))))))))....)))))..............-..............-.. ( -18.40) >consensus AUUGGUUGCUUUCAUGUGAAGCCUGUUAAC_AUUUUAACGACAACUUGU___CCGUUGAUUGCGUUUUAUGUGAAAUACUGUAACAAUUAAAAAUCAUCAAUUUUCCUCUUUUC_AA ....(((((((((((((((((((.((((((.......((((....)))).....)))))).).)))))))))))))....)))))................................ (-19.36 = -19.36 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:48 2006