Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,990,179 – 3,990,291 |
Length | 112 |
Max. P | 0.939207 |
Location | 3,990,179 – 3,990,291 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 67.50 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -15.26 |
Energy contribution | -16.35 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.45 |
Mean z-score | -1.89 |
Structure conservation index | 0.49 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3990179 112 + 22224390 CUCGAAAUCUGGCUUAGGUUUUGCUUCUAUUCUUCGGGCGAGAAGAACCCGUUUGUCAACGGCAUUCAGGUGGAUGUGGAUUCCACAGCCCACUUAAAUAUGCCAUCAUAUU ...((....((((...((.....(((((..((....))..)))))...))....))))..(((((..((((((.(((((...)))))..))))))....))))).))..... ( -34.00) >DroSec_CAF1 12312 112 + 1 CUCGAAAUCUGGCUUAGGUUUUGCUUCUUUUCUUCGGGCAAGAAAAACCCGUUUGUCAACGGCAUUCAGGUGGAUGUGGAUUCCACAGCCCACUUAAAUAUGCCAUCAUAUU ...((....((((...((((((...((((.((....)).)))))))))).....))))..(((((..((((((.(((((...)))))..))))))....))))).))..... ( -33.80) >DroSim_CAF1 10148 112 + 1 CUCGAAAUCUGGCUUAGGUUUUGCUUCUUUUCUUCGGGCGAGAAGAACCCGUUUGUCAACGGCAUUCAGGUGGAUGUGGAUUCCACAGCCCACUUAAAUAUGCCAUCAUAUU ...((....((((...((.....((((((.((....)).))))))...))....))))..(((((..((((((.(((((...)))))..))))))....))))).))..... ( -36.00) >DroEre_CAF1 10098 109 + 1 UCCCAAAUCUGGCUUCGGUUUUGCUUCUUU---UCAGGAAAGAAGAACCCGUUUGUCAACGGCUUUCAGGUGGAAGUGGAUCCCACAGCCCACUUCAAUAUGCCAUCAUAUU .........((((..(((.....(((((((---(...))))))))...)))...))))..(((.((.((((((..((((...))))...)))))).))...)))........ ( -29.30) >DroYak_CAF1 10120 109 + 1 CUCCAAAUCUUGACUAAGUUUUGCUUCUUU---UCGGGCUAGAAAAACCCGUUUGUCAACGGCUUUCAGGUGGAAGUGGAUUCCACAGCCCACUUAAAUAUGCCAUCAUAUU ...((((.(((....))).)))).......---..(((((.((((...(((((....))))).))))..((((((.....))))))))))).....((((((....)))))) ( -26.50) >DroPer_CAF1 17936 112 + 1 AGCUUCACAGGUACAGUUGUUUUCAAAGGCUGAGACAGAUGAGAGUGAGUCCAGGGCCAAAAAUGGGUCGCUGUUGCAUUGGAAUAUAAUUUUGCAUUCAAAGCGGAAAUUG .((((.....(((.((((((((((((...(((.(((..((....))..))))))((((.......))))((....)).)))))).)))))).))).....))))........ ( -26.50) >consensus CUCGAAAUCUGGCUUAGGUUUUGCUUCUUUUCUUCGGGCAAGAAGAACCCGUUUGUCAACGGCAUUCAGGUGGAUGUGGAUUCCACAGCCCACUUAAAUAUGCCAUCAUAUU .........((((...((((((.((((((......))).))).)))))).....))))..(((((..((((((..((((...))))...))))))....)))))........ (-15.26 = -16.35 + 1.09)
Location | 3,990,179 – 3,990,291 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 67.50 |
Mean single sequence MFE | -29.17 |
Consensus MFE | -14.18 |
Energy contribution | -16.77 |
Covariance contribution | 2.59 |
Combinations/Pair | 1.25 |
Mean z-score | -1.49 |
Structure conservation index | 0.49 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3990179 112 - 22224390 AAUAUGAUGGCAUAUUUAAGUGGGCUGUGGAAUCCACAUCCACCUGAAUGCCGUUGACAAACGGGUUCUUCUCGCCCGAAGAAUAGAAGCAAAACCUAAGCCAGAUUUCGAG .......((((.((((((.(((((.(((((...)))))))))).))))))(((((....)))))(((((((......)))))))...............))))......... ( -34.30) >DroSec_CAF1 12312 112 - 1 AAUAUGAUGGCAUAUUUAAGUGGGCUGUGGAAUCCACAUCCACCUGAAUGCCGUUGACAAACGGGUUUUUCUUGCCCGAAGAAAAGAAGCAAAACCUAAGCCAGAUUUCGAG .....((((((((..(((.(((((.(((((...)))))))))).)))))))))))......(((((.......)))))..((((....((.........))....))))... ( -32.10) >DroSim_CAF1 10148 112 - 1 AAUAUGAUGGCAUAUUUAAGUGGGCUGUGGAAUCCACAUCCACCUGAAUGCCGUUGACAAACGGGUUCUUCUCGCCCGAAGAAAAGAAGCAAAACCUAAGCCAGAUUUCGAG .......((((.((((((.(((((.(((((...)))))))))).))))))(((((....))))).((((((......))))))................))))......... ( -32.80) >DroEre_CAF1 10098 109 - 1 AAUAUGAUGGCAUAUUGAAGUGGGCUGUGGGAUCCACUUCCACCUGAAAGCCGUUGACAAACGGGUUCUUCUUUCCUGA---AAAGAAGCAAAACCGAAGCCAGAUUUGGGA ((((((....))))))(((((((((.....).))))))))..((..((...((((....))))(((((((((((.....---)))))))...)))).........))..)). ( -29.10) >DroYak_CAF1 10120 109 - 1 AAUAUGAUGGCAUAUUUAAGUGGGCUGUGGAAUCCACUUCCACCUGAAAGCCGUUGACAAACGGGUUUUUCUAGCCCGA---AAAGAAGCAAAACUUAGUCAAGAUUUGGAG .....((((((...((((.(((((..((((...)))).))))).)))).))))))(((...((((((.....)))))).---....(((.....))).)))........... ( -30.40) >DroPer_CAF1 17936 112 - 1 CAAUUUCCGCUUUGAAUGCAAAAUUAUAUUCCAAUGCAACAGCGACCCAUUUUUGGCCCUGGACUCACUCUCAUCUGUCUCAGCCUUUGAAAACAACUGUACCUGUGAAGCU ........(((((...((((..............))))((((.(.....((((.(((...((((............))))..)))...))))((....)).)))))))))). ( -16.34) >consensus AAUAUGAUGGCAUAUUUAAGUGGGCUGUGGAAUCCACAUCCACCUGAAAGCCGUUGACAAACGGGUUCUUCUAGCCCGAAGAAAAGAAGCAAAACCUAAGCCAGAUUUCGAG .....(((((((..((((.((((...((((...))))..)))).)))))))))))......(((((.......))))).................................. (-14.18 = -16.77 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:46 2006