Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,985,897 – 3,985,991 |
Length | 94 |
Max. P | 0.529419 |
Location | 3,985,897 – 3,985,991 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.13 |
Mean single sequence MFE | -18.53 |
Consensus MFE | -5.37 |
Energy contribution | -5.32 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.40 |
Mean z-score | -2.08 |
Structure conservation index | 0.29 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3985897 94 - 22224390 ----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCACACCACA--ACUCUCGCCAG ----.(((((..(((.(((.((.....((((((..---------------..))----).........(((((((....))))-)))..)))....)).))).))).--..))))).... ( -18.20) >DroSec_CAF1 8053 96 - 1 ----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCAUACCACCACACUCUCGCCAG ----.(((((..((((.((.((.....((.(((..---------------..))----))).......(((((((....))))-)))..............)).)).))))))))).... ( -17.90) >DroSim_CAF1 5887 96 - 1 ----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AAAU----CCAUUCAUAAUUCGCAUUCAAAUGC-GAAAUUCACCACACCAUACCACCACACUCUCGCCAG ----.(((((..((((.((.((.....((.(((..---------------..))----))).......(((((((....))))-)))..............)).)).))))))))).... ( -17.90) >DroEre_CAF1 5818 83 - 1 ----UCGGGAUCGUAUUGUCGUCCCUCUGAGAUCA---------------AAAC----CCACUCUUAAUUCGCAUUCAAAUGC-GAAGUUCACCAC-------------ACUCUCGUCAG ----..((((.((......))))))...((((...---------------....----..........(((((((....))))-)))((.....))-------------..))))..... ( -17.80) >DroYak_CAF1 5848 87 - 1 ----UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA---------------AACCGUAAUCAUUCUUCAUUCGCAUUCAAAUGC-GAGGUUCACCAC-------------ACUCUCGUCAG ----.(((((..((((.((.(..((((.((((...---------------............)))).....((((....))))-))))..))).))-------------))))))).... ( -21.06) >DroAna_CAF1 6477 108 - 1 AAUAUUUAACGCGUGUUAUUGUCCCACCAAAAAAAACAACAAGAAAACAGAAAU----UCAUUCACAUGGCGAAUUCAAAUGCCGAAAUUCACCACGA------AGA--GCGCGCGCAAG .........((((((((....((...................(((........)----)).......(((.((((((.......).))))).))).))------..)--))))))).... ( -18.30) >consensus ____UCGAGAUCGUGUUGUCGUCCCUCUGAGAUCA_______________AAAU____CCAUUCAUAAUUCGCAUUCAAAUGC_GAAAUUCACCACAC______AC___ACUCUCGCCAG .....(((((........(((......)))......................................(((((((....)))).)))........................))))).... ( -5.37 = -5.32 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:42 2006