Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 522,699 – 522,810 |
Length | 111 |
Max. P | 0.880040 |
Location | 522,699 – 522,810 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -21.40 |
Energy contribution | -23.64 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.84 |
Structure conservation index | 0.59 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 522699 111 + 22224390 AAUCCCUAGCUGGCUUACACCCGGCCAUCCCGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC--------- ........(((((.......)))))....(((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))...)).--------- ( -35.91) >DroSec_CAF1 9162 110 + 1 AAUCUCUGGCUGGCUUACACCCGGCC-CCCAGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC--------- .......((((((.......))))))-.((((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))..))).--------- ( -39.91) >DroSim_CAF1 9544 110 + 1 AAUCUCUGGCUGGCUUACACCCGGCC-CCCAGUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC--------- .......((((((.......))))))-.((((((((((.((......)))).)))))...(((((((((.(((...................))).)))))))))..))).--------- ( -39.91) >DroEre_CAF1 8556 95 + 1 AAUCUCUGGCUGGCUUACCC----------------CCACUUUUCCGGGGGAGCGCCUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUCGCUAAGGCCAUGGC--------- ............(((..(((----------------((........))))))))(((...((((((((..(((...................)))..))))))))...)))--------- ( -32.51) >DroYak_CAF1 7936 104 + 1 AAUCUCUGGCUGGCUUACCC----------------CCGCUUUUCCGGAGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUCGCUGAGACCAUGGCUCCUUCUCC ..(((((((..(((......----------------..)))...)))))))...((...((((.(((((((((........................)))))).))).))))...))... ( -31.66) >consensus AAUCUCUGGCUGGCUUACACCCGGCC__CC_GUCGCCCACUUUUCCGGGGGAGCGACUUAGCCUUGGCUCAGCUUUCCACUUAACCUUUUUCGCUUGGCUAAGGCCAUGGC_________ ........(((.((((...(((((....................))))).))))......(((((((((.(((...................))).)))))))))...)))......... (-21.40 = -23.64 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:46 2006