Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,967,743 – 3,967,835 |
Length | 92 |
Max. P | 0.847741 |
Location | 3,967,743 – 3,967,835 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.51 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -20.76 |
Energy contribution | -20.96 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -2.52 |
Structure conservation index | 0.67 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3967743 92 + 22224390 UGUUGAGCAGCUCGUCAAGUACAUUGAAAACGAUGUCAACGGUGGC------GGAAACAGUGCCGCUGGACAGCGCA---AGAAGGAGCGCAAGAAGCAAA ((((..((.(((((((..(.((((((....)))))))..(((((((------(....)...))))))))))..(...---.)...))))))....)))).. ( -31.10) >DroSec_CAF1 17712 92 + 1 UGUUGAGCAGCUCGUCAAGUACAUUGAAAACGAUGUCAACGUUGGC------GGAAACAGUGCCGCUGGACAGCGCA---AGAAGGAGCGCAAGAAGCAAA ((((.(((.((.((((((((((((((....))))))..)).)))))------(....).).)).))).))))((((.---.......)))).......... ( -30.50) >DroEre_CAF1 18277 92 + 1 UGUCGAGCAGCUCGUCAAGUACAUUGAAAACGAUGUCAACGGUGGC------GGGAACAGUGCCGCUGGACAGCGCA---AGAAGGAGCGCAAGAAGCAAA ((((.(((.((.(((((.((((((((....))))))..))..))))------(....).).)).))).))))((((.---.......)))).......... ( -30.30) >DroYak_CAF1 17782 92 + 1 UGUCGAGCAGCUUGUCAAGUAUAUUGAAAACGAUGUCAACGGUGGC------GGGAACAGCGCCGCUGGACAGCGCA---AGAAGGAGCGCAAGAAGCAAA .........(((((((..(.((((((....)))))))..(((((((------(.......))))))))))).((((.---.......))))...))))... ( -30.70) >DroAna_CAF1 19968 101 + 1 UGUCGAGCAGCUGGUCAAGUACAUUGAGAACGAUGGUGCCGGAGGUGGGGGUGGCAACAAUGCGGCCGCCCAGCAGAAGAAGAAGGAGCGCAAGAAGCAGA ......((..((((.((....(((((....))))).)))))).(.(((((((.(((....))).))).)))).).............))((.....))... ( -31.40) >consensus UGUCGAGCAGCUCGUCAAGUACAUUGAAAACGAUGUCAACGGUGGC______GGAAACAGUGCCGCUGGACAGCGCA___AGAAGGAGCGCAAGAAGCAAA ..((..((.((((.((((.....))))...((.((((..(((((((......(....)...))))))))))).))..........))))))..))...... (-20.76 = -20.96 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:38 2006