Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,962,409 – 3,962,499 |
Length | 90 |
Max. P | 0.550098 |
Location | 3,962,409 – 3,962,499 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -21.53 |
Consensus MFE | -20.03 |
Energy contribution | -19.39 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.10 |
Structure conservation index | 0.93 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3962409 90 + 22224390 GAGUGCGCAGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA ...(((((.....(((((((...((((((((((......................))))))))))...))).......)))).))))).. ( -19.86) >DroSec_CAF1 12547 90 + 1 GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA ...(((((.(((((((.(((...((((((((((......................))))))))))...)))..))))).))..))))).. ( -20.35) >DroSim_CAF1 12729 90 + 1 GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUUAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA ...(((((.(((((((.(((...((((((((((......................))))))))))...)))..))))).))..))))).. ( -20.35) >DroEre_CAF1 12781 90 + 1 GAGUGCGUGGCUAUGUGCUCCCUUCUUUUCAGUUGCUAAACCAAAAAAGAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGCAUA ..((((.((..(((((.(((...((((((((((......................))))))))))...)))..)))))..)).))))... ( -23.55) >DroYak_CAF1 12678 90 + 1 GAGUGCGCGGCUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAGAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGCAUA ..((((((..((.(((((((.((((((((((((......................))))))))))..)).))...))))).)))))))). ( -23.55) >consensus GAGUGCGCGGUUAUGUGCUCCCUUCUUUUCAGUUGCCAAACCAAAAAAUAAAAACGCUGAGAAGGUCAGAGAAAUGUACACAGGCGUAAA ...(((((..((.(((((((.((((((((((((......................))))))))))..)).))...))))).))))))).. (-20.03 = -19.39 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:36 2006