Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,959,082 – 3,959,186 |
Length | 104 |
Max. P | 0.500000 |
Location | 3,959,082 – 3,959,186 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.42 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -6.46 |
Energy contribution | -8.22 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.32 |
Mean z-score | -1.90 |
Structure conservation index | 0.25 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3959082 104 - 22224390 UUGAUUUUGCUUACCGAUAGUUGGGAAACCAGCUCUUA--------------UUGAUUUUGGGGCUAAAAAUGUAAGCCAUGCAAAUGAAGUUAACGUUUAAAAACAAGUCAAUUCCU-- ((((((((((...((((..(((((....)))))((...--------------..))..))))((((.........))))..)))))..........(((....)))..))))).....-- ( -23.00) >DroSec_CAF1 9233 106 - 1 UCGACUUUGCUUAUCGAUAGUUGGGAAACCAGAUUUUA--------------UUGAUUUUGGGGCUAAAAAUGUAAGCCAUGCAAGCAAAGUUAACGUCUCAAUAUAAGUCAAGUCCUUA ..((((((((((((((((((((((....))))...)))--------------))))).....((((.........))))....))))))))))........................... ( -27.50) >DroSim_CAF1 9434 88 - 1 UUGACUUUGCUUAUCGAUAGUUGGGAAACCAGAUC-----------------UUGAUUUUGGGGCUAAAAAUGUAAGCCAUGCAAGCAAAGUUAACGUUUCAAU---------------G (((((((((((((((((...((((....))))...-----------------))))).....((((.........))))....)))))))))))).........---------------. ( -27.80) >DroEre_CAF1 9467 116 - 1 UUGACUUU----AUCGAUAGUUAGGAAAACAAUUUUUAGAUGGCAGCGCUGAAAGAUUUUGGCGCUAAAAACUUCAUCCAUGCGGUUGAAAUUAAACUUCCAAAAUAAGUCAAGUGUAUG (((((((.----......((((......................(((((..((....))..)))))......((((.((....)).))))....))))........)))))))....... ( -23.46) >DroYak_CAF1 9373 120 - 1 UUGACUUUAUUUAUCGAUAGUUAGGAAACCAGUUUGUAGAUGGCAGCGCAGAAUUAUUUUGGCGCUAAAAAUUUUAGCAUUGCCGUUGAAUUUUAAAUUCCAAAAUAAGUCAAAUGUUUA (((((((((((....))))....((((...........(((((((((.((((.....))))))(((((.....)))))..)))))))..........)))).....)))))))....... ( -25.90) >consensus UUGACUUUGCUUAUCGAUAGUUGGGAAACCAGAUUUUA______________UUGAUUUUGGGGCUAAAAAUGUAAGCCAUGCAAGUGAAGUUAACGUUUCAAAAUAAGUCAAGUCCUUA (((((((((.........((((((....))))))............................((((.........)))).......)))))))))......................... ( -6.46 = -8.22 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:35 2006