Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,951,048 – 3,951,143 |
Length | 95 |
Max. P | 0.657762 |
Location | 3,951,048 – 3,951,143 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -15.32 |
Energy contribution | -16.55 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.63 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3951048 95 - 22224390 --CACUGUGAAUUAGACACGAUUCAUUUAGCAGAGACACGAACCACAUCUAGCUGAUACAAACACCAUGCAAAAGCGCGGCAAUUUUAAACUUUGCU --....(((((((......)))))))..(((((((...........(((.....))).......((.(((....))).))..........))))))) ( -16.40) >DroSec_CAF1 1321 97 - 1 CACACUGCGAAUUUGGCGCAUUCUCGUUAGCGGAGACACGAACCCCAUAUAGCUGAUAUAACAACCUUGCGUGAGCGCGCCAAUUUUAAACUUCGCU ......(((((.(((((((......(((((((....)..(.....).....))))))...........((....)))))))))........))))). ( -28.50) >DroSim_CAF1 1355 96 - 1 CACACUGCGAAUUUGGCGCAUUCUCGCUAGCGGAGACACAAAC-CCAUAUAGCUGAUACAACAACCUUGCGUGAGCGCGCCAAUUUUAAAAUUCGCU ......(((((((((((((......((((..((..........-))...))))...............((....)))))))).......))))))). ( -28.11) >consensus CACACUGCGAAUUUGGCGCAUUCUCGUUAGCGGAGACACGAACCCCAUAUAGCUGAUACAACAACCUUGCGUGAGCGCGCCAAUUUUAAACUUCGCU ......(((((.(((((((......((((((....................))))))...........((....)))))))))........))))). (-15.32 = -16.55 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:32 2006