Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,939,106 – 3,939,201 |
Length | 95 |
Max. P | 0.987424 |
Location | 3,939,106 – 3,939,201 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.73 |
Mean single sequence MFE | -20.86 |
Consensus MFE | -15.33 |
Energy contribution | -15.63 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.23 |
Mean z-score | -2.14 |
Structure conservation index | 0.73 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3939106 95 + 22224390 ACCCAUUCCC-------------AUUCGCCUUCCUCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA ..........-------------..................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20) >DroSec_CAF1 55496 103 + 1 A----UUCCCAUUCC-CGUUCCAAUUCCCCUUCCCCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA .----..........-.........................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20) >DroSim_CAF1 45611 107 + 1 ACCCAUUCCCAUUCC-CGUUCCAAUUCCCCUUCCCCAACCCCUGCCC----CAUCCGCACCCA-CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA ...............-.........................((((((----(...((((....-...))))...(((....))))).)))))..................... ( -22.20) >DroEre_CAF1 61660 83 + 1 AC-------------------------CCCUUCGCCAACCCCUGCCC----AAUCCGCACCCA-CCAUGCGAAUGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA ..-------------------------......((......((((((----....((((....-...))))..((((....))))).))))).........)).......... ( -19.16) >DroYak_CAF1 60375 83 + 1 AC-------------------------CCCUUCACCAACCCCUGCCC----AAUCCGCACCCA-CCAUGCGUAUGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA ..-------------------------..............((((((----....((((....-...))))..((((....))))).)))))..................... ( -18.60) >DroAna_CAF1 49503 108 + 1 C----CUCCCAGCCCCCACUCCGGGACACC-UCCCCACCCCCUUUUUUUAGUAUAUGCCUCCACCCAUGCCUCUUGCUAAGGGCGACGGCAGUCAAAAAUCGCAUAAAUUAAA .----.................((((....-))))...........((((((.(((((.........((((..((((.....)))).))))..........))))).)))))) ( -20.81) >consensus AC___UUCCC_____________AUUCCCCUUCCCCAACCCCUGCCC____CAUCCGCACCCA_CCAUGCGUACGCCGAAGGGCGGCGGCAGUCAAAAAUCGCAUAAAUUAAA .........................................(((((.........((((........))))..((((....))))..)))))..................... (-15.33 = -15.63 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:31 2006