Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,931,217 – 3,931,312 |
Length | 95 |
Max. P | 0.584452 |
Location | 3,931,217 – 3,931,312 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -33.08 |
Consensus MFE | -27.31 |
Energy contribution | -27.28 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.11 |
Mean z-score | -1.31 |
Structure conservation index | 0.83 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3931217 95 + 22224390 UCCUGGAAGCCGGUGGCACUGUGGAGCAGCACAAGGCCGCUGUGGCAGCAGCCACGGCCAUGAAGUUCGAUGGUAAGUACAU--UAUUUACUCCUCA ....(((.(((((((((..((((......))))..))))))(((((....))))))))..............(((((((...--))))))))))... ( -33.80) >DroGri_CAF1 122822 84 + 1 UUUUGGAGGCCGGCGGCACCGUGGAACAGCACAAGGCCGCUGUGGCAGCUGCCACGGCUAUGAAAUUUGAUGGUAAGUCUCAAC------------- .....(((((..(((((...(((......)))...)))((((((((....))))))))..............))..)))))...------------- ( -32.60) >DroSec_CAF1 47705 95 + 1 UCCUGGAAGCCGGUGGCACGGUGGAGCAGCACAAGGCCGCUGUGGCAGCAGCCACGGCCAUGAAGUUCGAUGGUAAGUACAU--UAUUAACCCCUUA ....((..(((((((((...(((......)))...))))))(((((....)))))))).............(((.((((...--)))).)))))... ( -30.40) >DroEre_CAF1 53925 87 + 1 UCCUGGAAGCCGGUGGCACUGUGGAGCAGCACAAGGCCGCUGUGGCAGCUGCCACGGCCAUGAAGUUCGAUGGUAAGUGCAU----------CAUUA ........(((((((((..((((......))))..))))))(((((....))))))))..........((((.......)))----------).... ( -31.80) >DroYak_CAF1 52672 95 + 1 UCCUGGAAGCCGGUGGCACUGUGGAGCAGCACAAGGCUGCUGUGGCUGCUGCCACGGCCAUGAAGUUCGAUGGUAAGUACAU--AAUUUACUCAUUG ((.(((..(((...))).((((((((((((...((....))...)))))).))))))))).))....(((((((((((....--.)))))).))))) ( -34.50) >DroAna_CAF1 40038 89 + 1 UCCUGGAAGCCGGCGGCACUGUGGAGCAGCACAAGGCCGCUGUGGCAGCUGCCACGGCCAUGAAAUUCGAUGGUAGGUUCA--------ACUCCCCA ....(((((((((((((..((((......))))..))))))(((((....))))).(((((........))))).))))..--------..)))... ( -35.40) >consensus UCCUGGAAGCCGGUGGCACUGUGGAGCAGCACAAGGCCGCUGUGGCAGCUGCCACGGCCAUGAAGUUCGAUGGUAAGUACAU_______ACUCCUUA ........(((((((((..((((......))))..))))))(((((....))))))))....................................... (-27.31 = -27.28 + -0.03)
Location | 3,931,217 – 3,931,312 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -31.05 |
Consensus MFE | -26.01 |
Energy contribution | -25.43 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.32 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3931217 95 - 22224390 UGAGGAGUAAAUA--AUGUACUUACCAUCGAACUUCAUGGCCGUGGCUGCUGCCACAGCGGCCUUGUGCUGCUCCACAGUGCCACCGGCUUCCAGGA .((.(((((....--...)))))....))...(((...(((((((((.((((....((((((.....))))))...)))))))).)))))...))). ( -31.40) >DroGri_CAF1 122822 84 - 1 -------------GUUGAGACUUACCAUCAAAUUUCAUAGCCGUGGCAGCUGCCACAGCGGCCUUGUGCUGUUCCACGGUGCCGCCGGCCUCCAAAA -------------..(((((.((......)).)))))..((((((((....))))).(((((.(((((......))))).))))).)))........ ( -29.00) >DroSec_CAF1 47705 95 - 1 UAAGGGGUUAAUA--AUGUACUUACCAUCGAACUUCAUGGCCGUGGCUGCUGCCACAGCGGCCUUGUGCUGCUCCACCGUGCCACCGGCUUCCAGGA ...((((((....--(((.......)))..)))))).((((((((((....)))))((((((.....)))))).....).))))((........)). ( -28.50) >DroEre_CAF1 53925 87 - 1 UAAUG----------AUGCACUUACCAUCGAACUUCAUGGCCGUGGCAGCUGCCACAGCGGCCUUGUGCUGCUCCACAGUGCCACCGGCUUCCAGGA ...((----------(((.......)))))..(((...((((((((((.(((....((((((.....))))))...)))))))).)))))...))). ( -31.30) >DroYak_CAF1 52672 95 - 1 CAAUGAGUAAAUU--AUGUACUUACCAUCGAACUUCAUGGCCGUGGCAGCAGCCACAGCAGCCUUGUGCUGCUCCACAGUGCCACCGGCUUCCAGGA ...((((((....--...))))))((...(((((...(((((((((.((((((.((((.....)))))))))))))).).))))..)).)))..)). ( -29.30) >DroAna_CAF1 40038 89 - 1 UGGGGAGU--------UGAACCUACCAUCGAAUUUCAUGGCCGUGGCAGCUGCCACAGCGGCCUUGUGCUGCUCCACAGUGCCGCCGGCUUCCAGGA ..((((((--------((......((((.(.....)))))..(((((....))))).(((((.(((((......))))).))))))))))))).... ( -36.80) >consensus UAAGGAGU_______AUGUACUUACCAUCGAACUUCAUGGCCGUGGCAGCUGCCACAGCGGCCUUGUGCUGCUCCACAGUGCCACCGGCUUCCAGGA ................................(((...(((((((((.((((....((((((.....))))))...)))))))).)))))...))). (-26.01 = -25.43 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:26 2006