Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,923,114 – 3,923,222 |
Length | 108 |
Max. P | 0.809019 |
Location | 3,923,114 – 3,923,222 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 58.21 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -13.18 |
Energy contribution | -13.74 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.48 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3923114 108 + 22224390 A--GCCAAAGAGCCGGAAACACGGAAUAGCCACCGGGAAAAUGGCGCUUUCCAAGCGGCCCCUUACAAAGGACACGCCGUUGUCCGAAAGCAAUGGCAACCACACCAAUG-------- .--((((....((((....).(((........))).......)))((((((..((((((.(((.....)))....))))))....))))))..)))).............-------- ( -35.30) >DroPse_CAF1 54111 100 + 1 ACUGGCUUAGAGC---------AGAAGGGCCCACCGCAAGAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAGCAACAAC--------- .((((((....((---------....(((((((.(....).))).(((.....))))))).(((.((((((......))))))..))).))...)))..))).......--------- ( -30.50) >DroWil_CAF1 31342 82 + 1 ---------------------------UGCAGGCAGAAACAUGGCGCUAUCCAAGCGUCCAUUGACCAAAGAAACAGCUUUGGUUGAGAGCAACAACAACAAUGGUGGA--------- ---------------------------(((...........(((((((.....)))).)))(..(((((((......)))))))..)..))).................--------- ( -22.20) >DroAna_CAF1 31690 104 + 1 A--ACUAAGAGUCCAAUUAGAGAGUAAAGC---------CAUGGCGCUAUCGAAGCGGCCCCUCACCAAGGACACCCCCCUGGUGGAGAGCAAUAUGAA---UACCAAUAAUUCCGGU .--.((((........))))........((---------(....((((.....))))((.(..(((((.((......)).)))))..).))........---.............))) ( -23.00) >DroPer_CAF1 41984 100 + 1 ACUGGCUUAGAGC---------AGAAGGGCCCACCACAAGAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAGCAACAAC--------- .((((((....((---------....((.....))......(((((((.....)))).)))(((.((((((......))))))..))).))...)))..))).......--------- ( -27.50) >consensus A__GCCAAAGAGC_________AGAAGAGCCCACCGCAACAUGGCGCUUUCCAAGCGUCCACUCACCAAGGACACGCCCUUGGCCGAGAGCAAUAGCAACAACAACAAC_________ ............................((............((((((.....)))).)).....((((((......))))))......))........................... (-13.18 = -13.74 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:23 2006