Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,920,443 – 3,920,551 |
Length | 108 |
Max. P | 0.951130 |
Location | 3,920,443 – 3,920,551 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -24.05 |
Energy contribution | -24.80 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.04 |
Mean z-score | -2.07 |
Structure conservation index | 0.84 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3920443 108 - 22224390 UGCGAUCCAGGCUAGCAAAUCCAUUAGCGCCAUCUGACGCAUUUGCCAGCAGGUGAUUCAGGUCACAUCCACAUCCACAUUCACAUCCGCCUGCCGAUCGCAACGAGA ((((((((((((..((..........))(..((((((..((((((....))))))..))))))..)......................)))))..)))))))...... ( -31.10) >DroSec_CAF1 37076 102 - 1 UGCGAUCCAGGCUAGCAAACCCAUUAGCGCAAUCUGACGCAUUUUCCAGCAGGUGAUUCAGGUCACAUCCACAUCCA------CAUCCGCCUGCCGAUCGCAACGAGA ((((((((((((..((..........))(..((((((..(((((......)))))..))))))..)...........------.....)))))..)))))))...... ( -27.40) >DroEre_CAF1 43102 89 - 1 UGCGAUCCAGGCUAGCAAACCCAUUAGCAC-ACCUGACGCAUUUCCAAGCAGGUGAUUCAGGUCACA------------------UCCGACUGCCGAUCGCAUCGAGA (((((((..(((.................(-(((((.(..........))))))).....((((...------------------...))))))))))))))...... ( -26.40) >DroYak_CAF1 42186 89 - 1 AGCGAUCCAGGCUGGCAAACCCAUUAGCAC-ACCUGACGCAUACUCCAGCAGGUGAUUCAGGUCACA------------------UCCGCCUCCUGAUCGCAUCGAGA .((((((.(((..(((.............(-(((((.(..........))))))).....((.....------------------.))))).)))))))))....... ( -29.90) >consensus UGCGAUCCAGGCUAGCAAACCCAUUAGCAC_ACCUGACGCAUUUUCCAGCAGGUGAUUCAGGUCACA__________________UCCGCCUGCCGAUCGCAACGAGA .(((((((((((..((..........))...((((((..(((((......)))))..)))))).........................)))))..))))))....... (-24.05 = -24.80 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006