Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,915,538 – 3,915,630 |
Length | 92 |
Max. P | 0.964372 |
Location | 3,915,538 – 3,915,630 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.89 |
Mean single sequence MFE | -30.19 |
Consensus MFE | -27.02 |
Energy contribution | -27.28 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.90 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3915538 92 + 22224390 GCAAAGCCAAGCCGAAGGAAAUGAAAGCGAGUUGGGGGAGUGGGGCAAAGUUUUUGGCACUGCCAGCGUUUGCGGCAGCUGCGAAAGGCUUU ((....(((..((.......................))..))).))(((((((((.((((((((.((....))))))).))).))))))))) ( -28.70) >DroSec_CAF1 32524 91 + 1 GAAAAGCCAAGCCGAAGGAAAUGAAAGCGAGU-GGGGGAGUGUGGCAAAGUUUUUGGCACUGCCAGCGUUUGCGGCAGCUGCGAAAGGCUUU .....((((..((...................-...))....))))(((((((((.((((((((.((....))))))).))).))))))))) ( -29.15) >DroEre_CAF1 34743 89 + 1 GAAAAGCCAAGCCGAAGGAAAUGAAAGCGAGU-GGGG--GUGUGGCAAAGUUUUUGGCACUGCCAGCGUUUGCGGCAGCUGCGAAAGGCUUU .....((((.(((...................-...)--)).))))(((((((((.((((((((.((....))))))).))).))))))))) ( -31.45) >DroYak_CAF1 36532 89 + 1 GAAAAGCCAAGCCGAAGGAAAUGAAAGCGAGU-GGGG--GUGUGGCAAAGUUUUUGGCACUGCCAGCGUUUGCGGCAGCUGCGAAAGGCUUU .....((((.(((...................-...)--)).))))(((((((((.((((((((.((....))))))).))).))))))))) ( -31.45) >consensus GAAAAGCCAAGCCGAAGGAAAUGAAAGCGAGU_GGGG__GUGUGGCAAAGUUUUUGGCACUGCCAGCGUUUGCGGCAGCUGCGAAAGGCUUU .....((((.(((....)...((....))..........)).))))(((((((((.((((((((.((....))))))).))).))))))))) (-27.02 = -27.28 + 0.25)
Location | 3,915,538 – 3,915,630 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 96.89 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -22.31 |
Energy contribution | -22.31 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 1.00 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3915538 92 - 22224390 AAAGCCUUUCGCAGCUGCCGCAAACGCUGGCAGUGCCAAAAACUUUGCCCCACUCCCCCAACUCGCUUUCAUUUCCUUCGGCUUGGCUUUGC ((((((....(((.(((((((....)).))))))))..........(((..............................)))..)))))).. ( -22.31) >DroSec_CAF1 32524 91 - 1 AAAGCCUUUCGCAGCUGCCGCAAACGCUGGCAGUGCCAAAAACUUUGCCACACUCCCCC-ACUCGCUUUCAUUUCCUUCGGCUUGGCUUUUC ((((((....(((.(((((((....)).))))))))..........(((..........-...................)))..)))))).. ( -22.35) >DroEre_CAF1 34743 89 - 1 AAAGCCUUUCGCAGCUGCCGCAAACGCUGGCAGUGCCAAAAACUUUGCCACAC--CCCC-ACUCGCUUUCAUUUCCUUCGGCUUGGCUUUUC ((((((....(((.(((((((....)).))))))))..........(((....--....-...................)))..)))))).. ( -22.43) >DroYak_CAF1 36532 89 - 1 AAAGCCUUUCGCAGCUGCCGCAAACGCUGGCAGUGCCAAAAACUUUGCCACAC--CCCC-ACUCGCUUUCAUUUCCUUCGGCUUGGCUUUUC ((((((....(((.(((((((....)).))))))))..........(((....--....-...................)))..)))))).. ( -22.43) >consensus AAAGCCUUUCGCAGCUGCCGCAAACGCUGGCAGUGCCAAAAACUUUGCCACAC__CCCC_ACUCGCUUUCAUUUCCUUCGGCUUGGCUUUUC ((((((....(((.(((((((....)).))))))))..........(((..............................)))..)))))).. (-22.31 = -22.31 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:20 2006