Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,906,012 – 3,906,104 |
Length | 92 |
Max. P | 0.711946 |
Location | 3,906,012 – 3,906,104 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -14.67 |
Energy contribution | -15.52 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.21 |
Mean z-score | -2.37 |
Structure conservation index | 0.60 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3906012 92 - 22224390 UCCAGAUAACGGACACAAAAGCGAACUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--ACUUGAAGAAACUCG ..........(((((((...(.(.....).)..)))))))..((((.(((((..((.((((((....))))))))..--.))))).)))).... ( -24.80) >DroSec_CAF1 23228 92 - 1 UCCAGAUAACGGACACAAAAGCCAUCUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAAGAAACUCG ..........(((((((................)))))))((((((((((....)))((((((....))))))))))--)))............ ( -22.99) >DroSim_CAF1 19935 92 - 1 UCCAGAUAACGGACACAAAAGCCAACUUCACCCUGAGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAAGAAACUAG (((.......))).(((((((...((((......))))...)))))))...((((..((((((....))))))....--))))........... ( -18.30) >DroEre_CAF1 25431 91 - 1 UCCAGAUAACGGACACAAAGG-CAACUUCACCCUGUGUCCACUUUUGCCAAGACUGAGCAGUACUAGUGCUGCCAAA--AGUUGAGGAAACACG (((.......((((((((((.-...))).....)))))))(((((((.((....)).((((((....))))))))))--)))...)))...... ( -28.40) >DroYak_CAF1 26524 91 - 1 UCCAGAUAACGGACACAAAGG-CAACUUCACCCUGUGUCCACUUUUGCCAAGGCUGAGCAGUGCUAGUGCUGCCAAA--ACUUGAAGAAACUGG .((((.....((((((((((.-...))).....)))))))..((((..((((..((.((((((....))))))))..--.))))..)))))))) ( -31.10) >DroAna_CAF1 8170 77 - 1 UCCAGAUAACGGACACAAAGGAAACUUUCACCCUGUGUCCAUUUUUAUUCCA----------------UCUGCCAAGGAUAUUGGAGGA-CUCA (((.......((((((((((....)))......)))))))........((((----------------....(....)....)))))))-.... ( -21.10) >consensus UCCAGAUAACGGACACAAAAGCCAACUUCACCCUGUGUCCACUUUUGUCAAGACUGAGCAGUACUAGUGCUGCCAAA__AGUUGAAGAAACUCG ..........(((((((................))))))).((((.........((.((((((....))))))))........))))....... (-14.67 = -15.52 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:17 2006