Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,905,525 – 3,905,619 |
Length | 94 |
Max. P | 0.602832 |
Location | 3,905,525 – 3,905,619 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 77.72 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -16.62 |
Energy contribution | -17.46 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3905525 94 - 22224390 GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUGUAC-GUAUAGUCCGGAUCUCGGACACUCGGAC--------ACUUGGACAACGGUCCGAGGA ((((((((.((((((.((((.(........).)))).))))))))-))...(((((.....)))))....))))--------.(((((((....))))))).. ( -35.10) >DroSec_CAF1 22769 82 - 1 GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG-----UAUAGUCCGGAUCUCGG--------AC--------ACUUGGACAACGGUCCGAGGA .........((((((.((((.(........).)))).)))))-----)...(((((.....)))--------))--------.(((((((....))))))).. ( -25.90) >DroSim_CAF1 19472 82 - 1 GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG-----UAUAGUCCGGAUCUCGG--------AC--------ACUUGGACAACGGUCCGAGGA .........((((((.((((.(........).)))).)))))-----)...(((((.....)))--------))--------.(((((((....))))))).. ( -25.90) >DroEre_CAF1 24885 103 - 1 GUCCAUGUCGCAUGUCUGUCCCCUCAUCCUGCGGCACAUAUGUAUAGUCCAGUCCGGAUCUCGGACUCUUGGACUCUUUGACUCUUGGACUACGGAUUCUGGA (((((.(((((((((.((((.(........).)))).))))))..(((((((((((.....)))))...))))))....)))...)))))............. ( -32.70) >DroYak_CAF1 25983 82 - 1 GUCCAUGUCGCAUGUCUGUCCCCUCAUCCAGCGGCACAUAU---------AGUCUGGAUCUCGAACUCCCGGAC--------UCUUGGACUACGGAUUC---- (((((((((((.((..((......))..)))))))).....---------(((((((...........))))))--------)..))))).........---- ( -25.30) >consensus GUCCAUGUCGCAUGUCUGUCCCCUCAUUCCGCGGCACAUAUG_____UAUAGUCCGGAUCUCGGAC_C__GGAC________ACUUGGACAACGGUCCGAGGA (((((((((((.....((......))....))))))...............(((((.....)))))...................)))))............. (-16.62 = -17.46 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:16 2006