Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 520,994 – 521,099 |
Length | 105 |
Max. P | 0.987428 |
Location | 520,994 – 521,099 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.43 |
Mean single sequence MFE | -26.51 |
Consensus MFE | -21.78 |
Energy contribution | -21.62 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.28 |
Structure conservation index | 0.82 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 520994 105 - 22224390 GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAA ((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80) >DroSec_CAF1 7204 105 - 1 GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAU ((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80) >DroSim_CAF1 7597 105 - 1 GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAU ((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80) >DroEre_CAF1 7141 113 - 1 GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACAAGCGAACAAGCGAACACACAGCAAAU ((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.(((.((......))....))).)))))))).)).... ( -27.50) >DroYak_CAF1 6317 112 - 1 GCAGCAGGAUAUCCUUGCAGCAGUGUCGGCAAGUGAGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAAAC--------AGCGAGCACACGGCAAAU ((.(((((.....))))).))..(((((....(((.((((((..........))))((((((..............))))))............--------.))...))).)))))... ( -27.64) >consensus GCAGCAGGAUAUCCUUGCAGGAGUGUCG_______AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA________AGCGAACACACGGCAAAU ((.(((((.....)))))....((((((..........((((..........))))((((((..............))))))......................)).))))...)).... (-21.78 = -21.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:20 2006