Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,895,445 – 3,895,540 |
Length | 95 |
Max. P | 0.955967 |
Location | 3,895,445 – 3,895,540 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -21.29 |
Energy contribution | -20.73 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -3.03 |
Structure conservation index | 0.72 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3895445 95 + 22224390 UAAAUGUGUUGGGAG----UCACCG--AUGGGAAAAGCGCGGGGAAAUGGUAGCUGCAAAUGCGGGAAAAGCGCCAAAAGCUGGGAAACCGGCAGCGGGAA ....(.((((((...----...)))--))).).....(((((.(...(..(..((((....)))).)..).).))....(((((....))))).))).... ( -28.40) >DroSec_CAF1 12805 96 + 1 UAAAUGUGUUG-GAG----UCACCGUGUUGGGAAAAGCACGGGGAAAUGGUAGCUGCAAAUGCGGGAAAAGCGCCAAAAGCUGGGAAACCGGCAGCGGGAA .....(((((.-...----((.(((((((......)))))))...........((((....))))))..))))).....(((((....)))))........ ( -32.50) >DroSim_CAF1 9934 96 + 1 UAAAUGUGUUG-GAG----UCACCGUGUUGGGAAAAGCGCGGGGAAAUGUUAGCUGCAAAUGCGGGAAAAGCGCCAAAAGCUGGGAAACCGGCAGCGGGAA .....(((((.-...----((.(((((((......)))))))...........((((....))))))..))))).....(((((....)))))........ ( -32.10) >DroEre_CAF1 14926 94 + 1 UAAAUGUGCUG-GAG----UCGUCG--GUGUGAAAGGCGUGGGGAAAUGGUAGCUGCAAAUGCGGGAAAAGCGGAAAAAGCUGGGAAACCGGCAGCGGGUA ......(((((-...----((.(((--((.......)).))).))..))))).((((...(((.......)))......(((((....))))).))))... ( -25.10) >DroYak_CAF1 15314 98 + 1 UAAAUGAGCUG-GAGGACCUCACCG--GUGAGGAAAGCGUGGGGAAAUGGUAGCUGCAAAUGCGGGAAAAGCGGAAAAAGCUGGGAAACCGGCAGCGGGAA ......(((((-..(..((((((.(--.(......).)))))))...)..)))))((...(((.......)))......(((((....))))).))..... ( -29.10) >consensus UAAAUGUGUUG_GAG____UCACCG__GUGGGAAAAGCGCGGGGAAAUGGUAGCUGCAAAUGCGGGAAAAGCGCCAAAAGCUGGGAAACCGGCAGCGGGAA ....((((((.........................))))))............((((...(((.......)))......(((((....))))).))))... (-21.29 = -20.73 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:11 2006