Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,890,296 – 3,890,400 |
Length | 104 |
Max. P | 0.999603 |
Location | 3,890,296 – 3,890,400 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 97.69 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -33.74 |
Energy contribution | -33.54 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -2.26 |
Structure conservation index | 0.99 |
SVM decision value | 3.77 |
SVM RNA-class probability | 0.999603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3890296 104 + 22224390 GGUGGUGCUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAAUAAGUGCAGAAAUAUGGCGAAGGG .......((.(((((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).))))))))).)).. ( -29.40) >DroSec_CAF1 7805 104 + 1 GGUGGUACUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAAUAAGUGCAGAAAUAUGGCGGAGGG .......((((((((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).)))))))))))).. ( -35.90) >DroSim_CAF1 4875 104 + 1 GGUGGUACUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAAUAAGUGCAGAAAUAUGGCGGAGGG .......((((((((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).)))))))))))).. ( -35.90) >DroEre_CAF1 8420 104 + 1 GGUGGUGCUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAAUAAGUGCAGAAAUAUGGUGGAGCG ......((((..(((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).)))))))..)))). ( -36.70) >DroYak_CAF1 10274 104 + 1 GGUGGUGCUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAGUAAGUGCAGAAAUAUGGUGGAGGG .......(((..(((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).)))))))..))).. ( -32.80) >consensus GGUGGUGCUCUGCCAUGUUCUGUGGUUAAUUUGUGUGCUUAAAAGCGCUUUACGACUUUGCUGCAUUUAUGCCCCAAGAAUAAGUGCAGAAAUAUGGCGGAGGG .......((((((((((((..((.((........(((((....)))))...)).))....((((((((((.........)))))))))).)))))))))))).. (-33.74 = -33.54 + -0.20)
Location | 3,890,296 – 3,890,400 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 97.69 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -20.18 |
Energy contribution | -20.42 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.30 |
Structure conservation index | 0.94 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3890296 104 - 22224390 CCCUUCGCCAUAUUUCUGCACUUAUUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGCACCACC ..((..(((((..(((((...(((...(((..((.((((.((.((...........)))).)))).))...)))..)))...))))).)))))..))....... ( -20.90) >DroSec_CAF1 7805 104 - 1 CCCUCCGCCAUAUUUCUGCACUUAUUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGUACCACC ..(((.(((((..(((((...(((...(((..((.((((.((.((...........)))).)))).))...)))..)))...))))).))))).)))....... ( -22.70) >DroSim_CAF1 4875 104 - 1 CCCUCCGCCAUAUUUCUGCACUUAUUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGUACCACC ..(((.(((((..(((((...(((...(((..((.((((.((.((...........)))).)))).))...)))..)))...))))).))))).)))....... ( -22.70) >DroEre_CAF1 8420 104 - 1 CGCUCCACCAUAUUUCUGCACUUAUUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGCACCACC .((((..((((..(((((...(((...(((..((.((((.((.((...........)))).)))).))...)))..)))...))))).))))..))))...... ( -23.20) >DroYak_CAF1 10274 104 - 1 CCCUCCACCAUAUUUCUGCACUUACUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGCACCACC ..(((..((((..(((((...((((.(((...(((....)))....)))..)))).(.(((....))).)............))))).))))..)))....... ( -18.40) >consensus CCCUCCGCCAUAUUUCUGCACUUAUUCUUGGGGCAUAAAUGCAGCAAAGUCGUAAAGCGCUUUUAAGCACACAAAUUAACCACAGAACAUGGCAGAGCACCACC ..(((.(((((..(((((...(((...(((..((.((((.((.((...........)))).)))).))...)))..)))...))))).))))).)))....... (-20.18 = -20.42 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:11 2006