Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,884,872 – 3,884,977 |
Length | 105 |
Max. P | 0.715846 |
Location | 3,884,872 – 3,884,977 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -25.60 |
Energy contribution | -26.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.84 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3884872 105 + 22224390 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAGUGAAAAGUGAACUAAGGAUGUGGAAAAGGGGCCGGGA .(((((((((..((((....))))....(..((((....))))..)..))).........(((((((((.........)))..)).))))....))))))..... ( -32.30) >DroSec_CAF1 2469 103 + 1 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAG--AAAAGUGAACUAAGGAUGUGGAAAAGGGGCAAGCA .(((((((((..((((....))))....(..((((....))))..)..))).........((((((..--...((....))..)).))))....))))))..... ( -32.70) >DroEre_CAF1 3037 102 + 1 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAA-ACACACCAG--AACAGUGAACUAAGUACGUGGGAAAGAGGCAAGGA .(((.(((((..((((....))))....(..((((....))))..)..))))).....-.....((((--.((((....))..)).).)))......)))..... ( -26.20) >consensus CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAG__AAAAGUGAACUAAGGAUGUGGAAAAGGGGCAAGGA .(((((((((..((((....))))....(..((((....))))..)..))).........((((((.................)).))))....))))))..... (-25.60 = -26.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:05 2006