Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,883,324 – 3,883,435 |
Length | 111 |
Max. P | 0.566253 |
Location | 3,883,324 – 3,883,435 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -31.10 |
Energy contribution | -31.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.87 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3883324 111 - 22224390 AGAUGGAAAGUGGGU--G----GUGGCUGGUGGGUGGCCUCAAGUGAACAGCGAGUUCAUUAGCUGGCAAAGGGUUUAAUUACCUACUCUGUUCAUUUAGCGCCACUUGGCUAACGC .............((--(----.(((((...(((((((((.(((((((((((.(((......))).))...((((......))))....))))))))))).)))))))))))).))) ( -37.90) >DroSec_CAF1 1044 110 - 1 CGAUGGAAAGUGGGA--G----GGAGUGGGU-GGUGGCCUCAAGUGAACAGCGAGUUCAUUAGCUGGCAAAGGGUUUAAUUACCUACUCUGUUCAUUUAGCGCCACUUGGCUAACGC ((.(((.((((((..--.----(((((((((-(((.((((...(....).((.(((......))).))...))))...))))))))))))(((.....))).))))))..))).)). ( -37.20) >DroEre_CAF1 1530 116 - 1 AGCUGGAAAAUGGGAAUGGGGGAAAGGGGGU-GGUGGCCUCAAGUGAACAGCGAGUUCAUUAGCUGGCAAAGGGUUUAAUUACCUACUCUGUUCAUUUAGCGCCACUUGGCUAACGC .((((((......(((((((((..(((((((-....))))).(((((((.....)))))))..))..)...((((......)))).)))))))).))))))(((....)))...... ( -33.90) >DroYak_CAF1 3551 99 - 1 ----------U-------GGGAAAAGCGGGU-GGUGGCCUCAAGUGAACAGCGAGUUCAUUAGCUGGCAAAGGGUUUAAUUACCUACUCUGUUCAUUUAGCGCCACUUGGCUAACGC ----------.-------.......((((((-((((((((.(((((((((((.(((......))).))...((((......))))....))))))))))).))))))..)))..))) ( -33.70) >consensus AGAUGGAAAGUGGGA__G____AAAGCGGGU_GGUGGCCUCAAGUGAACAGCGAGUUCAUUAGCUGGCAAAGGGUUUAAUUACCUACUCUGUUCAUUUAGCGCCACUUGGCUAACGC .........................(..(((..(((((((.(((((((((((.(((......))).))...((((......))))....))))))))))).)))))...)))..).. (-31.10 = -31.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:04 2006