Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 520,433 – 520,539 |
Length | 106 |
Max. P | 0.779458 |
Location | 520,433 – 520,539 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.35 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -20.75 |
Energy contribution | -21.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.79 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 520433 106 - 22224390 ACUCGAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCCAUCCCAGGAGCAACGCAGCACUCGAGUUGCCAUCGGAACAUUU ..(((((.....(((((((...--------------...((((((((((((((((......))).))))).)))).)))).)))))))...(((((......))))).)))))....... ( -26.30) >DroSec_CAF1 6687 106 - 1 ACUCCAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCUACACAAAUUCAAUCCCAGGAGCAACGCAGCACCCAGGUUGCCAUCGGAACAUCU ..(((.......(((((((..(--------------(....((((((((((.(((......)))..)))).))))))))..)))))))...(((((......)))))....)))...... ( -25.30) >DroSim_CAF1 7061 106 - 1 ACUCCAUUCAAGGCUCUUGAUA--------------UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCAAUCCCAGGAGCAACGCAGCACUCAGGUUGCCAUCGGAACAUCU ..(((.......(((((((..(--------------(....((((((((((((((......))).))))).))))))))..)))))))...(((((......)))))....)))...... ( -26.60) >DroEre_CAF1 6460 119 - 1 ACUCGAUUCAAGGCUCUUGAUAUCUGAUAUUUGAUAUCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACUCAAAUUCAAUCCCAGGAGCAGCGCAGCACUUAGGUUGCUA-CGGAACAUCU ..(((.......((((((((((((........))))))...((((((..((((((......))).)))...)))))).....))))))...(((((......)))))..-)))....... ( -26.30) >consensus ACUCCAUUCAAGGCUCUUGAUA______________UCUGAUGAAUUGUGUUAUAAAUUGAUAUCGACACAAAUUCAAUCCCAGGAGCAACGCAGCACUCAGGUUGCCAUCGGAACAUCU ......(((...(((((((.................((....)).((((((((((......))).))))))).........)))))))...(((((......)))))....)))...... (-20.75 = -21.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:16 2006