Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 29,854 – 29,968 |
Length | 114 |
Max. P | 0.516132 |
Location | 29,854 – 29,968 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 94.15 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -19.68 |
Energy contribution | -19.13 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.12 |
Mean z-score | -1.48 |
Structure conservation index | 0.94 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 29854 114 - 22224390 UGGUACCACAUUUCGGAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGAUAUACAAAAAGAUCAAAAAUAAUAUAAUUUCGUUGGACUGGAGAGCCAGUGAUUUCGAA ...........(((((((.......(((((((((((((.....)))))...(((((..........)))))..........))))))))..(((((....)))))..))))))) ( -19.00) >DroSec_CAF1 17163 114 - 1 UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA .......((((.((((.....(((((((....(....)....)))))))..)))).))))....((((((.......((((((...))))))((((....)))))))))).... ( -21.80) >DroSim_CAF1 16915 114 - 1 UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA .......((((.((((.....(((((((....(....)....)))))))..)))).))))....((((((.......((((((...))))))((((....)))))))))).... ( -21.80) >consensus UAUUAACGCAUUUCGAAAGUAUGAAAAUGAGAUGAAAACAAAAUUUUCAAGUUGACAUGCAAAAAGAUCAAAAAUAAUCUAACUUUGUUGGACUGGAGAGCCAGUGAUUUCGAA ...........((((((((((((..(((....((((((.....)))))).)))..))))).......(((.......((((((...))))))((((....)))))))))))))) (-19.68 = -19.13 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:12 2006