Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,869,886 – 3,869,985 |
Length | 99 |
Max. P | 0.911614 |
Location | 3,869,886 – 3,869,985 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -26.01 |
Energy contribution | -27.23 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.87 |
Structure conservation index | 0.75 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3869886 99 + 22224390 UAAAUAUAUGGUUGAUGUGGGAGAGUUGGGACAACCCAAGUCCUGAGUGACCGGAACACUUGAUUUGGCAGCCCUUUGGCUGCCGUCGCCUAUCAAUGA ..........(((((((.((((((.(((((....))))).))..(((((.......))))).....(((((((....))))))).)).))))))))).. ( -35.20) >DroEre_CAF1 51742 87 + 1 ---AGAUGUGGAU------GGGCAGUUGGGACAACCCAAGUCCUGAGUGACCGGAACACUUGAUUUGGCAGCCCUUUGGCUGCC---GCCUAUCAAUGA ---....(((..(------.((((.(..((((.......))))..).)).)).)..)))(((((.((((((((....)))))))---)...)))))... ( -36.30) >DroYak_CAF1 47755 90 + 1 UAAAUAUAUGGCU------AGGGAGUUGGGACAACCCAAGUCCUGAGUGACCGGAACACUUGAUUUAGCAGCCCUUUGGCUGCC---GCCUAUCAAUGA .........(((.------.((((.(((((....))))).))))(((((.......)))))......((((((....)))))).---)))......... ( -32.00) >consensus UAAAUAUAUGGAU______GGGGAGUUGGGACAACCCAAGUCCUGAGUGACCGGAACACUUGAUUUGGCAGCCCUUUGGCUGCC___GCCUAUCAAUGA .........(((........((((.(((((....))))).))))(((((.......))))).....(((((((....)))))))...)))......... (-26.01 = -27.23 + 1.22)
Location | 3,869,886 – 3,869,985 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -30.21 |
Consensus MFE | -25.01 |
Energy contribution | -24.90 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.51 |
Structure conservation index | 0.83 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.909965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3869886 99 - 22224390 UCAUUGAUAGGCGACGGCAGCCAAAGGGCUGCCAAAUCAAGUGUUCCGGUCACUCAGGACUUGGGUUGUCCCAACUCUCCCACAUCAACCAUAUAUUUA ...(((((.(....)(((((((....)))))))..))))).......(((......(((.(((((....)))))...))).......)))......... ( -29.22) >DroEre_CAF1 51742 87 - 1 UCAUUGAUAGGC---GGCAGCCAAAGGGCUGCCAAAUCAAGUGUUCCGGUCACUCAGGACUUGGGUUGUCCCAACUGCCC------AUCCACAUCU--- .....(((.(((---(((((((....)))))))......(((.....((((......))))((((....)))))))))).------))).......--- ( -30.80) >DroYak_CAF1 47755 90 - 1 UCAUUGAUAGGC---GGCAGCCAAAGGGCUGCUAAAUCAAGUGUUCCGGUCACUCAGGACUUGGGUUGUCCCAACUCCCU------AGCCAUAUAUUUA .........(((---(((((((....)))))))......((((.......))))..(((.(((((....))))).)))..------.)))......... ( -30.60) >consensus UCAUUGAUAGGC___GGCAGCCAAAGGGCUGCCAAAUCAAGUGUUCCGGUCACUCAGGACUUGGGUUGUCCCAACUCCCC______AACCAUAUAUUUA .........((....(((((((....)))))))......((((.......))))..(((.(((((....))))).)))..........))......... (-25.01 = -24.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:00 2006