Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,869,631 – 3,869,750 |
Length | 119 |
Max. P | 0.686007 |
Location | 3,869,631 – 3,869,750 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.34 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -33.76 |
Energy contribution | -33.60 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.25 |
Structure conservation index | 0.90 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3869631 119 + 22224390 AAACAUUUUGUUCGCACUACAUUUGCUCCACUGUGCGUGACCAGUGGGAGACGGAGAUCCACUGGU-CGCUGGUCAGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG ........................((.((.(((((.((((((((((((.........)))))))))-))).((..(((....)))..))))))).)).))......((((.....)))). ( -37.00) >DroSec_CAF1 52440 119 + 1 AAACAUUUCGUUCUUACAAUAUUUGCCCCACUGUGCUUGACCAGUUGGAGACGGAGAUCCACUGGU-CGCUGGUCAGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG ........................(((((.(((.(((((((((((.(((........)))))))))-))..))))))(((.......)))...)))))........((((.....)))). ( -36.20) >DroSim_CAF1 23674 119 + 1 AAACAUUUUGUUUUUACCAUAUUUGCCCCACUGUGCUUGACCAGUGGGAGACGGAGAUCCACUGGU-CGCUGGUCAGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG .........(((...(((......(((((.(((((((((((((((((....)((....))......-)))))))))))...........)))))))).)).......)))....)))... ( -39.02) >DroEre_CAF1 51484 116 + 1 AAACGUUUUC----UACUAUAUUCGCCCCACUGUACUUGGCCAGUCGGAGACGGAGAUCCACUGGUCCGCUGGUCAGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG ..........----.........((((((.......((((((((.((((..(((.......))).))))))))))))(((.......)))...)))))).......((((.....)))). ( -37.10) >DroYak_CAF1 47491 115 + 1 GAACAUUUUG----UACCAUACUCGCCCCACUGUACUUGACCAGUGGGAGACGGAGAUCCACUGGU-CGCUGGUCGGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG ..........----.........((((((.(((.((((((((((((((.........)))))))))-))..))))))(((.......)))...)))))).......((((.....)))). ( -38.10) >consensus AAACAUUUUGUU__UACCAUAUUUGCCCCACUGUGCUUGACCAGUGGGAGACGGAGAUCCACUGGU_CGCUGGUCAGGAGUUCCUUUCUCACAGGGGCGCUAAAAAGGGUUAUUAACUCG .......................((((((...((.....))..((((((((.((((.(((((..(....)..))..))).)))))))))))).)))))).......((((.....)))). (-33.76 = -33.60 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:58 2006