| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,862,698 – 3,862,794 |
| Length | 96 |
| Max. P | 0.709657 |
| Location | 3,862,698 – 3,862,794 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 78.56 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -5.84 |
| Energy contribution | -8.32 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3862698 96 - 22224390 --ACCCCCACAGAAAUCUCCUCCUGCCGUAGAGUUUAACCC-CCGGG-UAAUGAACGCAAUAAACGCAACCGAAAAAUUUUAAACUCUCACACGGCGAAA --.....................(((((((((((((((((.-...))-).......((.......)).............))))))))...))))))... ( -21.00) >DroSec_CAF1 45699 91 - 1 --ACCCCCAAAGA-AUCUCCUCCUGCCCGGGAGUUUAACC--CCGGG-UUAUGGACGCAUU-AACGCA-CCGA-AAAUUUUAAACUCUNNNNNNNNNNNN --........(((-......(((.(((((((........)--)))))-)...))).((...-...)).-....-...........)))............ ( -19.40) >DroEre_CAF1 44535 97 - 1 --ACCCCCAUAGAAAUCUCAUCCUGCCGGAGAGUUUAACCCCCCGGG-UAAUGAACGCAAUAAACGCAACCGAAAAAUUUCAAACUCUCACACGACGAAA --...............((.((.((...((((((((.((((...)))-).......((.......))..............)))))))).)).)).)).. ( -17.00) >DroYak_CAF1 40646 96 - 1 --ACCCCCACAGAAAUCUCCUCCUGCCGGAGAGUUUAACCC-CCGGG-UAAUGGACGCAAUAAACGCAACCGAAAAAUUUCAAACUCUCACACGGCGAAA --.....................(((((((((((((.(((.-...))-)..(((..((.......))..))).........))))))))...)))))... ( -23.60) >DroAna_CAF1 46698 81 - 1 CCAUCCCCAUA---------UCUUGC---------UAACCC-CCGGGAAAAUGAACGCAAUAAACGCAACCGAAAAAUUUCAAACUCUCACACGGCGAAA ...........---------..((((---------(..((.-...))....(((..((.......))....(((....)))......)))...))))).. ( -8.30) >consensus __ACCCCCACAGAAAUCUCCUCCUGCCGGAGAGUUUAACCC_CCGGG_UAAUGAACGCAAUAAACGCAACCGAAAAAUUUCAAACUCUCACACGGCGAAA ........................((((.(((((((..((.....)).........((.......))..............)))))))....)))).... ( -5.84 = -8.32 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:56 2006