Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,852,672 – 3,852,771 |
Length | 99 |
Max. P | 0.912728 |
Location | 3,852,672 – 3,852,771 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -22.26 |
Energy contribution | -23.70 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.17 |
Mean z-score | -2.15 |
Structure conservation index | 0.67 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3852672 99 + 22224390 -----AAAGGGAUGGUGGGCUGGGGUUCUCU------GGCCACAACCAAAGUUAAAUGCAGCAUAAAUAAUG-UGCGUGAGCCCGCCCGGCCAAAAGGUCAGGCCCCAAAA -----...(((.((((.(((..((....)).------.)))...))))..(((..(((((.(((.....)))-))))).)))..(((.((((....)))).)))))).... ( -36.10) >DroSec_CAF1 35928 98 + 1 -----AAAGGGAUGGCAGGCUGGGGCUCUCU------GGCCACAACCAAAGUUAAAUGCAGCAUAAAUAAUG-UGCGUGAGCCCGCCCGGCCAAAAGGUCAGGCCCCAA-A -----...(((..(((.(((..((....)).------.)))..............(((((.(((.....)))-)))))..))).(((.((((....)))).))))))..-. ( -35.80) >DroEre_CAF1 34518 97 + 1 -----A-UGGGAUGGCAGGCUGGGGUUCUUU------GGCCACAACCAAAGUUAAAUGCAGCAUAAAUAAUG-UGCGUGAGUCCGCCCGGCCAAAAGGUCAGGCCCCAA-A -----.-((((.((((.(((((((...((((------((......))))))....(((((.(((.....)))-))))).......))))))).....))))...)))).-. ( -34.90) >DroYak_CAF1 30927 97 + 1 -----A-UGGGAAGGCAGGCUGGGGUUCUUU------GGCCACAACCAAAGUUAAAUGCAGCAUAAAUAAUG-UGCGUGAGCCCGCCCGGCCAAAAGGUCAGGCCCCAA-A -----.-((((...........(((((((((------((......))))).....(((((.(((.....)))-)))))))))))(((.((((....)))).))))))).-. ( -35.70) >DroAna_CAF1 34518 105 + 1 UGGUUAGUGGGAUGGG--GGAGAGGUUGUUCCCAAAAAGCCAAAACCAAAGUUAAAUGCAGCAUAAAUAAUUUUGCGUGUGCCCGGUCG---AGAAGGUCAGAGCCAAA-U (((((...(((....(--((((......)))))...........((((((((((.............)))))))).))...)))(..(.---....)..)..)))))..-. ( -22.52) >consensus _____A_UGGGAUGGCAGGCUGGGGUUCUUU______GGCCACAACCAAAGUUAAAUGCAGCAUAAAUAAUG_UGCGUGAGCCCGCCCGGCCAAAAGGUCAGGCCCCAA_A ........(((..(((.((.((.((((..........)))).)).))........(((((.(((.....))).)))))..))).(((.((((....)))).)))))).... (-22.26 = -23.70 + 1.44)
Location | 3,852,672 – 3,852,771 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -20.38 |
Energy contribution | -22.58 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.62 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3852672 99 - 22224390 UUUUGGGGCCUGACCUUUUGGCCGGGCGGGCUCACGCA-CAUUAUUUAUGCUGCAUUUAACUUUGGUUGUGGCC------AGAGAACCCCAGCCCACCAUCCCUUU----- ....((((((((.((....)).)))))(((((...(((-(((.....))).)))......(((((((....)))------))))......))))).....)))...----- ( -38.00) >DroSec_CAF1 35928 98 - 1 U-UUGGGGCCUGACCUUUUGGCCGGGCGGGCUCACGCA-CAUUAUUUAUGCUGCAUUUAACUUUGGUUGUGGCC------AGAGAGCCCCAGCCUGCCAUCCCUUU----- .-..((((((((.((....)).)))))((((((..(((-(((.....))).))).......((((((....)))------)))))))))...........)))...----- ( -38.20) >DroEre_CAF1 34518 97 - 1 U-UUGGGGCCUGACCUUUUGGCCGGGCGGACUCACGCA-CAUUAUUUAUGCUGCAUUUAACUUUGGUUGUGGCC------AAAGAACCCCAGCCUGCCAUCCCA-U----- .-.(((((((((.((....)).)))))((......(((-(((.....))).)))......(((((((....)))------))))....))..........))))-.----- ( -31.80) >DroYak_CAF1 30927 97 - 1 U-UUGGGGCCUGACCUUUUGGCCGGGCGGGCUCACGCA-CAUUAUUUAUGCUGCAUUUAACUUUGGUUGUGGCC------AAAGAACCCCAGCCUGCCUUCCCA-U----- .-.(((((((.........))))(((((((((...(((-(((.....))).)))......(((((((....)))------))))......)))))))))..)))-.----- ( -39.00) >DroAna_CAF1 34518 105 - 1 A-UUUGGCUCUGACCUUCU---CGACCGGGCACACGCAAAAUUAUUUAUGCUGCAUUUAACUUUGGUUUUGGCUUUUUGGGAACAACCUCUCC--CCCAUCCCACUAACCA .-.((((.((.((.....)---)))))))(((...(((.((....)).)))))).........(((((.(((......((((........)))--).....)))..))))) ( -17.40) >consensus U_UUGGGGCCUGACCUUUUGGCCGGGCGGGCUCACGCA_CAUUAUUUAUGCUGCAUUUAACUUUGGUUGUGGCC______AAAGAACCCCAGCCUGCCAUCCCA_U_____ ....((((((((.((....)).)))))((......(((.(((.....))).)))..........(((((.((..............)).)))))..))..)))........ (-20.38 = -22.58 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006