| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,852,280 – 3,852,374 |
| Length | 94 |
| Max. P | 0.712186 |
| Location | 3,852,280 – 3,852,374 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Mean single sequence MFE | -21.85 |
| Consensus MFE | -15.18 |
| Energy contribution | -15.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3852280 94 + 22224390 CACCCAAGCCAUGCA-ACCUCAAUCGAGGUUUUCACGCCUGAACAUUUCGCACAACUGCAGGCGGUUUUUCAAUUUUCGGUCACUGAAAAAAGGC----------- .......(((....(-(((((....))))))....(((((((.....))(((....)))))))).........(((((((...)))))))..)))----------- ( -23.80) >DroPse_CAF1 39376 97 + 1 AAUCCAGGCC---UA-ACCUCAAUAGGGGUUUUCACGCCUGAACAUUUC--ACAACUGCAGGCUGUUUUUCAAUUUUCGGUCACUGAAAAAAGGGAA-AACUCU-- ....(((((.---.(-(((((....)))))).....)))))........--.............(((((((..(((((((...)))))))...))))-)))...-- ( -24.40) >DroEre_CAF1 34144 93 + 1 UCCCCAACCCAUGCAAACCUCAAUCGGGGUUUUCACGCCUGAACAUUUC--ACAACUGCAGGCGGUUUUUCAAUUUUCGGUCACUGAAAAAAGGC----------- ...((((((..((.(((((((....))))))).)).(((((........--.......)))))))))......(((((((...)))))))..)).----------- ( -22.96) >DroWil_CAF1 34259 96 + 1 AAUGUAGACC---UA-ACCUCAAUCGAGGGUUUCACGCCUGAACAUUUU--ACAACUGCAGGCGGUUUUUCAAUUUUUGGUCACCCAACAUAAUAAA-GAU---UA ......((((---..-.((((....))))......((((((........--.......))))))..............))))...............-...---.. ( -21.36) >DroYak_CAF1 30578 92 + 1 ACCCCAACCCAUGCA-ACCUCAAUCGGGGUUUUCACGCCUGAACAUUUC--ACAACUGCAGGCGGUUUUUCAAUUUUCGGUCACUAAAAAAAGGC----------- ......(((.....(-(((((....))))))....((((((........--.......))))))..............)))..............----------- ( -17.16) >DroPer_CAF1 39647 98 + 1 AAACCAGGCC---UA-ACCUCAAUCGGGGUUUUCACGCCUGAACAUUUC--ACAACUGCAGGCUCUUUUUCAAUUUUCGGUCACUGAAAAAAGGGAAAAACUCU-- ....(((((.---.(-(((((....)))))).....)))))........--..............((((((..(((((((...)))))))...)))))).....-- ( -21.40) >consensus AACCCAAGCC___CA_ACCUCAAUCGGGGUUUUCACGCCUGAACAUUUC__ACAACUGCAGGCGGUUUUUCAAUUUUCGGUCACUGAAAAAAGGC___________ ...(((((((......(((((....)))))......(((((.................)))))))))).....(((((((...)))))))..))............ (-15.18 = -15.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:50 2006