Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 519,781 – 519,901 |
Length | 120 |
Max. P | 0.846647 |
Location | 519,781 – 519,901 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -39.52 |
Consensus MFE | -30.76 |
Energy contribution | -31.45 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.78 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 519781 120 - 22224390 GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGCCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUAAGAGUUGCGGUUGGGUUUCUCCAUGGGCAUGGGGUUGGGCGAAGG ...((((((((((((((..(((((((((..(((((((.....)))).)))..)..........((((....))))))))))))))))))))..((((((....))))))....)))))). ( -43.10) >DroSec_CAF1 6070 120 - 1 GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGUUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG ........(((((((((......((((((.(((((...(((..(((((((.(((.........((((....))))..)))))))))).)))....))))).))))))))))))))).... ( -40.00) >DroSim_CAF1 6446 120 - 1 GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGUUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG ........(((((((((......((((((.(((((...(((..(((((((.(((.........((((....))))..)))))))))).)))....))))).))))))))))))))).... ( -40.00) >DroEre_CAF1 5871 96 - 1 GGCUUUUGCAGCCGGCCAAGUAACUUUGUGUGUGGCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGG------------------------UGGCGU .((....)).((((.(((.(((((((((..((..((((....))))..))..)..........((((....))))))))))))...))).------------------------)))).. ( -35.00) >consensus GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG ...((((((((((((((..(((((((((..((((((((....))))))))..)..........((((....))))))))))))))))))))..((((........))))....)))))). (-30.76 = -31.45 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:14 2006