Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,847,547 – 3,847,637 |
Length | 90 |
Max. P | 0.993155 |
Location | 3,847,547 – 3,847,637 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 72.37 |
Mean single sequence MFE | -22.47 |
Consensus MFE | -17.72 |
Energy contribution | -17.62 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.21 |
Mean z-score | -1.59 |
Structure conservation index | 0.79 |
SVM decision value | 2.38 |
SVM RNA-class probability | 0.993155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3847547 90 + 22224390 AGUACCAGCAGAUGUGGAGUGAGCAUCCUUUAGACUGGAAU-GGGGCUGAAGUAUUAUCUCAUUUCAGUAUUUGCUGUAUUUGCCGUAUUU (((((.(((((((((((((((((.((.((((((.((.....-))..)))))).))...))))))))).))))))))))))).......... ( -26.90) >DroSec_CAF1 30881 76 + 1 AGUACCAGCAGAUGUGGAGUGGGCAUCCUUCAGAAUGGAAUUGGGGCUGGAGUAUUAUCUCAUUUCAGUAUUUGCU--------------- ......(((((((((((((((((.((.((((((..(.......)..)))))).))...))))))))).))))))))--------------- ( -22.20) >DroEre_CAF1 29383 69 + 1 AGUGCCAGCCAAUGUGGAAUGGGCAUCCUUCGGAU-------GGAGCGGGAGUAUUAUCUCAUUUCUGUAUUUGCA--------------- .......((.((((..((((((((((((...))))-------)..((....)).....)))).)))..)))).)).--------------- ( -18.30) >consensus AGUACCAGCAGAUGUGGAGUGGGCAUCCUUCAGAAUGGAAU_GGGGCUGGAGUAUUAUCUCAUUUCAGUAUUUGCU_______________ .......((((((((((((((((.((.((((((.............)))))).))...))))))))).)))))))................ (-17.72 = -17.62 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:49 2006