| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,829,053 – 3,829,146 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 3,829,053 – 3,829,146 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -13.12 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3829053 93 - 22224390 AAAGACAAAGAAGGAAAUGUAAUCCAUAAGGCAGCCAUCAGCGGCCAUCCUACUCAUUAUGGAUCUGCCAG--------CCAACAAGGAGUACUCGAAAAA ..................(((.(((....(((.((.....))(((.((((..........))))..))).)--------)).....))).)))........ ( -18.50) >DroSec_CAF1 14489 93 - 1 AAAGACAAAGGAGGAAAUGUAAUCCAUAAGGCAGCCAUCAGCGGCCAUCCUACUCAUUAUGGAUCUGCCAG--------CCAACAAGGAGUACUCUAAAAA ..(((...(((((((.......)))....(((.((.....)).))).))))((((....(((.........--------))).....))))..)))..... ( -18.70) >DroEre_CAF1 18410 100 - 1 AAAGACAAAGGAGGAAAUGUAAUCCAUAAGGCAGCCAUCAGCAGCCAUCGUACUCAUUAUGGAUCUGCCCAGAAGCUUUCAACCAAAAAAUACUC-AAAAA .........((..((((.((..((((((((((.((.....)).)))...(....).)))))))(((....))).))))))..))...........-..... ( -18.50) >DroYak_CAF1 14421 100 - 1 AAAGACAAAGGAAGAAAUGUAAUCCAUAAGGCGGCCAUCAGCAGCCAUCGUACUCAUUAUGGAUCUGCCAAGAAGUUUUCAAACGAAAAUUGCCC-AAAAA .........((.......((((((((((((((.((.....)).)))...(....).)))))))).))).....(((((((....)))))))..))-..... ( -20.00) >consensus AAAGACAAAGGAGGAAAUGUAAUCCAUAAGGCAGCCAUCAGCAGCCAUCCUACUCAUUAUGGAUCUGCCAA________CAAACAAAAAGUACUC_AAAAA ..................((((((((((((((.((.....)).)))..........)))))))).)))................................. (-13.12 = -13.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:46 2006