Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,824,579 – 3,824,673 |
Length | 94 |
Max. P | 0.603553 |
Location | 3,824,579 – 3,824,673 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 72.64 |
Mean single sequence MFE | -20.38 |
Consensus MFE | -9.44 |
Energy contribution | -10.25 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.07 |
Mean z-score | -2.05 |
Structure conservation index | 0.46 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3824579 94 - 22224390 CUAGGGAUUCCAGAUUUGGAAAAGACCUUGCUGCUGGAAUUGCU--AAAACACAU----------GCACCCACUACUUCAAUCCCAAUCCACCUUUU----UUUUUUUUU ...((((((((((....((......))......)))))).(((.--.........----------))).............))))............----......... ( -16.40) >DroSec_CAF1 10136 91 - 1 CUAGGGAUUCCAGAUUUGGAACAGACCUUGGUGCUGGAAUUGC---------CAU----------GCACCCACUUCUUUGAUCCCAAUCCACCUUCUAUUAUUUUUUUUU ...((((((..(((...((......))..((((((((.....)---------)).----------)))))....)))..))))))......................... ( -22.40) >DroSim_CAF1 10012 91 - 1 CUGGGGAUUCCAGAUUUGGAACAGAUCUUGGUGCUGGAAUUGC---------CAU----------GCACCCACUACUUUGAUCCCAAUCCACCUUCUAUUAUUUUUUUUU ...((((((..(((((((...))))))).((((((((.....)---------)).----------))))).........))))))......................... ( -23.30) >DroYak_CAF1 10275 94 - 1 CU-GGGAUGCCAAAUUUGGAACAGACCUUGGU---AGAAGUGCUCUAAAACACUUGCGACCAAUAGCAACCACUACAUUGAUCCCAAUCCACGUUUUU------------ .(-(((((.(((....)))...........((---(((((((........)))))((........)).....))))....))))))............------------ ( -19.40) >consensus CUAGGGAUUCCAGAUUUGGAACAGACCUUGGUGCUGGAAUUGC_________CAU__________GCACCCACUACUUUGAUCCCAAUCCACCUUCUA___UUUUUUUUU ...((((((((((....((......))......)))))).(((......................))).............))))......................... ( -9.44 = -10.25 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:43 2006