Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,815,711 – 3,815,809 |
Length | 98 |
Max. P | 0.707302 |
Location | 3,815,711 – 3,815,809 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -42.03 |
Consensus MFE | -30.14 |
Energy contribution | -29.03 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.41 |
Mean z-score | -1.30 |
Structure conservation index | 0.72 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3815711 98 - 22224390 UCCCUGGGCACAGCCUGCACAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCCAAAUAGUGGGCUGCGGCAACGCCGGUGAAUGGCCGGAAA (((((.((((.....))).)...)))))((.(((((.....((....)).-....((((((.....))))))))))).)).(((((.....)))))... ( -43.20) >DroPse_CAF1 1123 98 - 1 UCCCUGGGCACAGCCCGCGCACAAAGGUGUGGCCGCCAGGCGAGCCACUA-AGCUGGCCGAGCUGGUGGGCUGCGGAUCCUCCGGAGAGUGGCCCCUCA .....((((.((((((.(((((....)))))(((((..(((.(((.....-.))).)))..)).)))))))))(((.....))).......)))).... ( -46.30) >DroEre_CAF1 2221 98 - 1 UCCCUGGGCACAGCCUGCGCAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCAAGAUAGUGGGCUGCGGCACCGCCGGAGAAUGGCCAGAGA ((.((((.(((((((..(((........))(((((......((....)).-...)))))......)..)))))((((...)))).....)).)))).)) ( -37.80) >DroYak_CAF1 1381 98 - 1 UCCCUGGGCACAGCCUGCGCAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCAACAUAGUGGGCUGCGGCACCGCUGAAGAAUGGCCGGAAA (((.(((.(((..(((.......)))..))).)))..))).((....)).-..(((((((...((((((((....)).)))))).....)))))))... ( -37.80) >DroAna_CAF1 1187 98 - 1 UCCCUGGGCCCAACCCGCUCACAAGGGCGUAGCCGUCAGUCGGGCCACCA-AGCUGGCCGAGUUGGUGGGUUGCGGUUCCCUUGGAGAUUGGCCAGAGA ((.((((..((((....(((.(((((((((((((..(((((((.(((...-...))))))).)))..).))))))...))))))))).)))))))).)) ( -41.30) >DroPer_CAF1 1117 99 - 1 UCCCUGGGCACAGCCCGCGCACAAAGGUGUGGCCGCCAGGCGAGCCACUAAAGCUGGCCGAGCUGGUGGGCUGCGGAUCCUCCGGAGAGUGGCCCCUCA .....((((.((((((.(((((....)))))(((((..(((.(((.......))).)))..)).)))))))))(((.....))).......)))).... ( -45.80) >consensus UCCCUGGGCACAGCCCGCGCACAAGGGAGUGGCCGCCAGAAGGGCAACCA_AACUGGCCGAGAUAGUGGGCUGCGGCACCGCCGGAGAAUGGCCAGAAA ...((((.((((((((((.......((.....))(((((..((....))....))))).......))))))))((((...)))).....)).))))... (-30.14 = -29.03 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:41 2006