Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,810,512 – 3,810,606 |
Length | 94 |
Max. P | 0.758063 |
Location | 3,810,512 – 3,810,606 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 79.72 |
Mean single sequence MFE | -22.61 |
Consensus MFE | -14.99 |
Energy contribution | -16.43 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.20 |
Mean z-score | -1.63 |
Structure conservation index | 0.66 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3810512 94 + 22224390 UCUAAUUA----AUGCCAGCGUAAAAACAAUUCGAUACCAGGGCUGCGCAACAACUGAAUAGGGUCACAAAGCCCUGGUAAGUUAUCGAAUG--ACAGAU (((.....----(((....))).......((((((((((((((((.........((.....)).......)))))))))).....)))))).--..))). ( -23.19) >DroGri_CAF1 11365 91 + 1 UACAAUUAAGCAAUGCUAACAACAAAAAACUUAAAUACCAGGGCUUCGAAG---------UCGUUGUUACUGCCCUUGUCUAUAAUCGAACAGGGCUGUU ........((((....(((((((......((........))((((....))---------)))))))))..(((((..((.......))..))))))))) ( -17.50) >DroSec_CAF1 9372 94 + 1 UCUAAUUA----AUGCCAGCGUAAAAACAAUUUGAUGCCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA--ACAGAU (((.....----(((....))).......((((((((((((((((((.(((........))).)).....))))))))).....))))))).--..))). ( -23.10) >DroSim_CAF1 9627 94 + 1 UCUAAUUA----AUGCCAGCGUAAAAACAAUUCGAUGCCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA--ACAGAU (((.....----(((....))).......((((((((((((((((((.(((........))).)).....))))))))).....))))))).--..))). ( -25.20) >DroEre_CAF1 9408 94 + 1 UCUAAUUA----AUGCCAGCGUAAAAACAAUGCGAAACCAGGGCUGCGCCACAACUGAAUUGGGUCAUAUAGCCCUGGUAAGUUAUCGAAUG--ACAAAU ........----......((((.......))))...((((((((((.(((.(((.....))))))....))))))))))..(((((...)))--)).... ( -25.40) >DroYak_CAF1 9445 94 + 1 UCUAAUUA----AUGCCAGCGUAAAAACAAUGCGAAACCAGGGCUGCGCAACAACUGAAUUGGGUCAUAUUGCCCUGGUGAGUUAUCGAAUG--ACAGAU (((.....----......((((.......))))...((((((((.((.(((........))).))......))))))))..(((((...)))--))))). ( -21.30) >consensus UCUAAUUA____AUGCCAGCGUAAAAACAAUUCGAUACCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA__ACAGAU .............................(((((((((((((((((.(..((...........))..).)))))))))).....)))))))......... (-14.99 = -16.43 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:40 2006