Locus 1276

Sequence ID X_DroMel_CAF1
Location 3,808,114 – 3,808,228
Length 114
Max. P 0.624636
window2044

overview

Window 4

Location 3,808,114 – 3,808,228
Length 114
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 74.49
Mean single sequence MFE -40.27
Consensus MFE -11.47
Energy contribution -10.95
Covariance contribution -0.52
Combinations/Pair 1.58
Mean z-score -2.35
Structure conservation index 0.28
SVM decision value 0.19
SVM RNA-class probability 0.624636
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3808114 114 + 22224390
UCC---UCUUGCAUGUUGGCCAACUGCCAUUGACCCUUCUCGUCCUCGAGGACGGCGAUCCUUUGCUGCAGUUCCUCGUUAUCAGCCAACAGUGAAGCCAACUGCUGUUGGCCAUCU
...---..(..(.(((((((.((((((.............(((((....)))))((((....)))).))))))....(....).))))))))..).((((((....))))))..... ( -37.60)
>DroVir_CAF1 9283 114 + 1
UCC---UCUUCAACAUGGGCCAGCUGCCACUGGCCCUUCUCAUCCUCGAGCACCGUGAUGCGCUGCUGCAGCUGCUCAUUCUCAGCUGUCAAGCGCAGCAGCUGCUGCUGCGCAUCC
...---......((..(((((((......)))))))..(((......)))....))(((((((.((.(((((((((........(((....)))..))))))))).)).))))))). ( -50.70)
>DroEre_CAF1 6958 114 + 1
UCC---UCCUGCAUGUUGGCCAACUGCCAUUGCCCCUUCUCGUCCUCGAGGACGGCGAUCCUCUGUUGCAGCUCCUCGUUGUCAGCCGCCAGUGAAGCCAACUGUUGCUGGCCAUCU
...---.((.(((.((((((..((((.(((((((..((((((....)))))).)))))).....((((((((.....)))).)))).).))))...))))))...))).))...... ( -39.60)
>DroMoj_CAF1 5360 114 + 1
UCC---UCUUCGACAUGGGCCAGUUGCCAUUGGCCCUUCUCAUCCUCUAGCACUGUGAUGCGCUGCUGCAGCUGCUCGUUCUCGGCGGUAAUCCGGGCCAGCUCCUGUUGGGUAUCC
...---.....((...((((((((....))))))))...))........((.(((.(((..(((((((.(((.....)))..))))))).)))))).(((((....))))))).... ( -35.80)
>DroAna_CAF1 7367 114 + 1
UCC---UCCUGCAUCUUGGACAACUGCCACUGGCCCUUCUCGUCCUCCAGCACCGUGAUGCGCUGCUGCAGCUCCUCGUUCUCCGUUUGGAGCGCGGCCAGUUGCUUCUGGCCGUCU
...---...(((.....((((....(((...))).......))))...((((.((.....)).)))))))(((((.((.....))...)))))((((((((......)))))))).. ( -39.70)
>DroPer_CAF1 6674 117 + 1
CCCUCUUCCAGCAUAUUGGACAACUGCCACUGGCCCUUCUCGUCCUCCAGCACAGUGAUUCGCUGUUGCAGAGUCUCGUUCUCGGCCGCCAAAGCGGUCAGUUCCUGCUGGCCGUCC
.......((((((....(((..((((((...((((.....((..(((..((((((((...))))).))).)))...)).....))))((....)))).)))))))))))))...... ( -38.20)
>consensus
UCC___UCCUGCAUAUUGGCCAACUGCCACUGGCCCUUCUCGUCCUCGAGCACCGUGAUGCGCUGCUGCAGCUCCUCGUUCUCAGCCGCCAGCGAGGCCAGCUGCUGCUGGCCAUCC
.......................((((...(((......)))......((((.((.....)).)))))))).........................((((((....))))))..... (-11.47 = -10.95 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:32 2006