Locus 1275

Sequence ID X_DroMel_CAF1
Location 3,807,324 – 3,807,443
Length 119
Max. P 0.518135
window2043

overview

Window 3

Location 3,807,324 – 3,807,443
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.02
Mean single sequence MFE -50.15
Consensus MFE -30.57
Energy contribution -32.02
Covariance contribution 1.45
Combinations/Pair 1.26
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value -0.03
SVM RNA-class probability 0.518135
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3807324 119 - 22224390
UGGCCAAGGAGGCCAAGAACUGUCACACCCAAUUGAGUGAGCUUCUCCACAAGGUUAAGGAAGCGAGCACGGCGGUAGAAACUGUUACCGUUGUGGAGACCGUGGUGGCCGUGACCGCU
.((.((....(((((...((.(((.(((.(....).))).((((((((....))....))))))...(((((((((((......)))))))))))..))).))..))))).)).))... ( -43.40)
>DroVir_CAF1 8076 119 - 1
UGGCCAAGGAGGCCAAGAAUGUGCACAGCCAGCUCUCGGAGCUGCUGCACAAGGUGAAGGAGGCCAGCACCGCGGUGGAGACGGUCACCGUCGUCGAGACCGUUGUCGCCGUCACCGCG
(((((.....)))))....((((((..((.(((((...))))))))))))).((((..((...))..))))(((((((.(((((((..((....)).))))))).......))))))). ( -52.50)
>DroPse_CAF1 5590 119 - 1
UGGCCAAGGAGGCCAAAAACUGCCACACCCAGCUGACGGAACUCCUGCAGAAGGUGAAAGAAGCCAGCACGGCGGUGGAAACGGUCACUGUCGUGGAGACAGUGGUCGCUGUGACGGCU
(((((.....)))))..........((((...(((..((....))..)))..)))).....((((..((((((...(....)(..(((((((.....)))))))..)))))))..)))) ( -53.80)
>DroMoj_CAF1 4111 119 - 1
UGGCCAAGGAGGCGAAGAAUGUGCACGUCCAGCUGACGGAGCUGCUGCAGAAGGUGAAGGAGGCGAGCACCGCAGUGGAGACGGUCACCGUGGUGGAAACAGUUGUCGCUGUCACCGCG
..(((.....))).......(((..(((((.((((.(((.((((((.((.....)).....))).))).))))))).).))))..)))(((((((...(((((....)))))))))))) ( -43.50)
>DroAna_CAF1 6433 119 - 1
UGGCCCGCGAGGCCAAGAACUGCCACGCCCAGCUGAGCGAGCUGCUGGCGAAGGUGAAGGAGGCCAGCUCCGCGGUGGAGACGGUCACCGUCGUGGAGACGGUGGUGGCCGUGACGGCG
(((((.....)))))......(((.((((..((.((((..(((.((.((....))..))..)))..)))).))))))...(((((((((..(((....)))..)))))))))...))). ( -57.40)
>DroPer_CAF1 5602 119 - 1
UGGCCAAGGAGGCCAAAAACUGCCACACCCAGCUGACGGAACUCCUGCAGAAGGUGAAGGAAGCCAGCACGGCGGUGGAAACGGUCACUGUCGUGGAGACAGUGGUAGCUGUGACGGCU
(((((.....))))).......((.((((...(((..((....))..)))..))))..)).((((..((((((..((....)).((((((((.....))))))))..))))))..)))) ( -50.30)
>consensus
UGGCCAAGGAGGCCAAGAACUGCCACACCCAGCUGACGGAGCUGCUGCAGAAGGUGAAGGAAGCCAGCACCGCGGUGGAAACGGUCACCGUCGUGGAGACAGUGGUCGCCGUGACCGCG
(((((.....)))))..........((((...(((.(((.....))))))..))))......(((..(((((((((((......)))))))))))...(((((....)))))...))). (-30.57 = -32.02 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006