Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,806,926 – 3,807,046 |
Length | 120 |
Max. P | 0.651759 |
Location | 3,806,926 – 3,807,046 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.56 |
Mean single sequence MFE | -43.68 |
Consensus MFE | -20.55 |
Energy contribution | -21.58 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.40 |
Mean z-score | -1.97 |
Structure conservation index | 0.47 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3806926 120 + 22224390 UGCUCCAGUUGCUUCUCAUGGCUCAUUUCCUUGGAGUUGAGCAGCUGAUCGAAUUGCUCUGAUUGCAGCUGGAGUUGUGUGAUCUCGGCACUCUGCCUGGCCACCAAUUGCAGCUGUUCU .....((((((((((((..((.......))...)))..))))))))).................(((((((.(((((.(((..(..(((.....))).)..)))))))).)))))))... ( -42.90) >DroVir_CAF1 7606 120 + 1 UGCUCCAUGUGCUUCUCGUAUGCCAUUUCGCUUUUGUUUAGCGACUGAUCGAACUGCUCCGCCUGCAGCUGCAGCUGCACCAGCUCUGCGCUCUGGCUGGCUAUCAGUUGCAGGUGCUCC .((...(((.((.........))))).(((((.......)))))...........))..((((((((((((.((((((...(((.....)))...)).))))..)))))))))))).... ( -38.40) >DroPse_CAF1 5216 120 + 1 UGCUCCAUGUACUUCUCGUGGCCCAUUUCCUUGUUGUUUAGCACUUGAUGGAACUGCUCCACCUGCUGCUGGAGCUGCGUCAGCUUGGCUUCCUGCGAGGCUAUCAGCUGCAGGUGUUCG .((.(((((.......))))).(((((....(((......)))...)))))....))..(((((((.((((((((((...))))))((((((....))))))..)))).))))))).... ( -43.40) >DroMoj_CAF1 3674 120 + 1 UGCUCCAUGUGCUUCUCGUGCGCCAUUUCGCUGUUGUUCAGCGACUGAUCGAAGCGUUCCGCCUGCAGCUGCAGCUGCACCAGCUCAGCACUCUGGCUGGCUAUCAGCUGCAGAUGCUCC .(((.(..((((.......))))....((((((.....))))))......).))).........(((.(((((((((..(((((.(((....))))))))....))))))))).)))... ( -47.70) >DroAna_CAF1 6038 120 + 1 UGCUCCAGCUGCUUCUCGUGGCUCAUCUCCUUGGUGUCCAGCAGCUGGUCGAACUGCUCCACCCGCAGCUGCAGCUGGGUGAUCUCGGCGCUCUGCUUGGCCACCAGCUGGAGGUGAUCC ..(((((((((......((((((.........((((...(((((.........))))).)))).((((..((.((((((....)))))))).))))..)))))))))))))))....... ( -50.40) >DroPer_CAF1 5228 120 + 1 UGCUCCAUGUACUUCUCGUGACCCAUUUCCUUGUUGUUUAGGACUUGAUGGAACUGCUCCACCUGCUGCUGGAGCUGCGUCAGCUUGGCUUCCUGCGAAGCUAUCUGCUGCAGGUGUUCG .((..((((.......))))..(((((((((........))))...)))))....))..(((((((.((..((((((...))))))((((((....))))))....)).))))))).... ( -39.30) >consensus UGCUCCAUGUGCUUCUCGUGGCCCAUUUCCUUGUUGUUUAGCAACUGAUCGAACUGCUCCACCUGCAGCUGCAGCUGCGUCAGCUCGGCACUCUGCCUGGCUAUCAGCUGCAGGUGUUCC .....((.(((((...((.((........))...))...))))).))............((((((((((((.((((.....)))).(((..........)))..)))))))))))).... (-20.55 = -21.58 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:30 2006