Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,806,109 – 3,806,222 |
Length | 113 |
Max. P | 0.781444 |
Location | 3,806,109 – 3,806,222 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -27.68 |
Energy contribution | -27.76 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.13 |
Mean z-score | -1.83 |
Structure conservation index | 0.78 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3806109 113 - 22224390 AGGAGUUGCGACGCGAGCGCCAAGAAGCCGAUCAGGAAGUCUUUCAACUGGGCCAGGAAAACUCCAGACUCAGGGAAGAAAUCUCUAAGCUUCAGGAGGAAAUCCAUAAUCUU .(((...(((.(....))))...(((((......(((..((((((..(((((.(.(((....))).).)))))))))))..)))....))))).........)))........ ( -30.70) >DroSec_CAF1 4970 113 - 1 AGGAGUUGCGACGCGAGCGCCAAGAAGCCGACCAGGAAGUCUUUCAACUGGGCCAGGAGAACUCCAGACUCAGGGAAGAAAUCUCCAAGCUCCAAGAGGACAUCCAUAAUCUU .(((((((((.(....))))..............(((..((((((..(((((.(.(((....))).).)))))))))))....))).))))))....((....))........ ( -33.00) >DroSim_CAF1 4965 113 - 1 AGGAGUUGCGACGCGAGCGCCAAGAAGCCGACCAGGAAGUCUUUCAACUGGGCCAGGAGAACUCCAGACUCAGGGAAGAAAUCUCCAAGCUCCAAGAGGACAUCCGUAAUCUU .(((((((((.(....))))..............(((..((((((..(((((.(.(((....))).).)))))))))))....))).))))))((((..((....))..)))) ( -34.10) >DroEre_CAF1 4956 113 - 1 AGGAGUUGCGACGCGAGGGCCAAGAAGCCCAGCAGGAAGUCUUUCAAAUGGGCCAGGAGAACUCCAGGCUCAGGGAAGAAAUCUCCAAGCUCCAGGAAGACAUCCAUAAUCUU .((((((.....((..((((......)))).)).(((..((((((...((((((.(((....))).)))))).))))))....))).)))))).(((.....)))........ ( -44.90) >DroYak_CAF1 5035 113 - 1 AGGAGCUGCGGCGCGAGCGCCAAGAAGCCGAGCAGGAAGUCUUUCAAAUGAGCCAGGAAAACGCCAGACUCAGGGAAGAAAUCUCCAAGCUUCAGGAGAACAUCCAUACUCUU .((..((..((((....)))).))...))(((..(((..((((((...((((.(.((......)).).)))).))))))..(((((........)))))...)))...))).. ( -35.60) >consensus AGGAGUUGCGACGCGAGCGCCAAGAAGCCGACCAGGAAGUCUUUCAACUGGGCCAGGAGAACUCCAGACUCAGGGAAGAAAUCUCCAAGCUCCAGGAGGACAUCCAUAAUCUU .(((((((((.(....))))..............(((..((((((...((((.(.(((....))).).)))).))))))....))).)))))).(((.....)))........ (-27.68 = -27.76 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:29 2006