Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,804,718 – 3,804,832 |
Length | 114 |
Max. P | 0.597115 |
Location | 3,804,718 – 3,804,832 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -50.20 |
Consensus MFE | -25.04 |
Energy contribution | -25.13 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.44 |
Mean z-score | -1.94 |
Structure conservation index | 0.50 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3804718 114 - 22224390 CCAGGAGGUGGAACGCGAGAGAUCCACUUUGAGUAGGGAAGUGACACUGCUUCGUUUGCAGCAUGACAGUGCUGAGCAAGAUGUUUUGGAGCUACAGGAACUUCGCAUGCAGGC ((..((((((((...(....).))))))))..((((.(((((..(...((((((....((((((....))))))(((.....))).))))))....)..))))).).))).)). ( -36.10) >DroPse_CAF1 3335 114 - 1 GCAGGAGGUGGAGCGGGAACGUUCCACCUUGAGCCGCGAGGUGACUCUGCUCCGGCUGCAGCAGGAUAGCGCCGAGCAGGACGUCUUGGAGCUGCAGGAGCUGCGGAUGCAAGU (((.(((((((((((....)))))))))))...(((((((....))).(((((.((.((..((((((....((.....))..))))))..)).)).))))).)))).))).... ( -60.90) >DroEre_CAF1 3524 114 - 1 CCAGGAGGUGGAACGCGAGAGAUCCACUUUAGGUCGAGAAGUGACCUUGCUCCGUUUGCAGAAUGACAGUGCCGAGCAAGAUGUUUUGGAGCUCCAGGAGUUGCGCAUGCAGGC ...(((((((((...(....).)))))...((((((.....))))))..))))(((((((...((.(((..((((((.....))))(((....)))))..)))))..))))))) ( -36.00) >DroMoj_CAF1 2018 114 - 1 GGCCGACGUGGAGCGCGAGCGUGCUGCGCUCAGCCGGGAGGCGGUCAUGCUGCGCAUGCAACAAGACAGCGCCGAGCAGGAUGUGCUCGAGUUGCAGGAGCUGCGCAUGCAGGU ((((((.(((.(((((....))))).))))).(((....))))))).(((((((((.((..(..(.((((..((((((.....)))))).))))).)..)))))))).)))... ( -55.10) >DroAna_CAF1 3804 114 - 1 CCAGGAGGUGGAGCGCGAGAGGUCCACCCUCAGCCGGGAGGUGACCCUGCUGAGACUCCAGCAGGACGGCGCCGAGCAGGAUGUCCUGGAGCUGCAGGAGCUGCGCAUGCAGGC ((((((((((((.(......).))))))(((.((((...(....)(((((((......))))))).))))...))).......))))))..(((((...((...)).))))).. ( -52.20) >DroPer_CAF1 3343 114 - 1 GCAGGAGGUGGAGCGGGAACGUUCCACCUUGAGCCGCGAGGUGACUCUGCUCCGGCUGCAGCAGGAUAGCGCCGAGCAGGACGUCUUGGAGCUGCAGGAGCUGCGGAUGCAAGU (((.(((((((((((....)))))))))))...(((((((....))).(((((.((.((..((((((....((.....))..))))))..)).)).))))).)))).))).... ( -60.90) >consensus CCAGGAGGUGGAGCGCGAGAGUUCCACCUUGAGCCGGGAGGUGACCCUGCUCCGGCUGCAGCAGGACAGCGCCGAGCAGGAUGUCUUGGAGCUGCAGGAGCUGCGCAUGCAGGC ....((((((((.(......).))))))))..(((....)))..((.(((((((.(((((((..((((...((.....)).)))).....)))))))......)))).))))). (-25.04 = -25.13 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:28 2006