Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,803,940 – 3,804,043 |
Length | 103 |
Max. P | 0.606438 |
Location | 3,803,940 – 3,804,043 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -38.17 |
Consensus MFE | -23.74 |
Energy contribution | -26.05 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.20 |
Mean z-score | -1.87 |
Structure conservation index | 0.62 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3803940 103 - 22224390 GGCAGAGGAAACAGUGCCCGAUGCUGUU---A---GUCACCAUUUGGAUUUGGGUCUGCCCCAAACGGAGCCAGUGGUGGAACCACUGAUCCAGCCCAAAAAGGCAUAU (((((((....)....((((((......---.---))).((....))....)))))))))......(((..((((((.....)))))).))).(((......))).... ( -36.60) >DroVir_CAF1 4786 103 - 1 ------CGAGACGGUGCCGGAUGCAGCCGUUGCCAGCUUCCAGCAGGAGCUGGGUCUGCCGCAGAGCGAGCCCGUCGUCGAGCCGCUGAUAACGCCAAAGAAGGCGUAU ------((((((((.((((..(((.((.(...((((((((.....))))))))..).)).)))...)).))))))).)))...........(((((......))))).. ( -43.00) >DroSec_CAF1 2809 103 - 1 AGCGGAGGAAACAGUGCCCGAUGCUGUU---A---GUCACCAUUUGGAUUUGGGUCUGCCGCAAACGGAGCCAGUGGUGGAACCACUGAUCCAGCCCAAAAAGGCAUAC .((((.(((..(((..((.((((.((..---.---..)).)))).))..)))..))).))))....(((..((((((.....)))))).))).(((......))).... ( -38.90) >DroSim_CAF1 2807 101 - 1 AGCGGAGGAAACAGUGCCCGAUGCUGU----A---GUCAC-AUUUGGAUUUGGGUCUGCCGCAAACGGAGCCAGUGGUGGAACCACUGAUCCAGCCCAAAAAGGCAUAC .((((.(((..(((..((.((((.((.----.---..)))-))).))..)))..))).))))....(((..((((((.....)))))).))).(((......))).... ( -38.40) >DroEre_CAF1 2749 103 - 1 UGCGGAGGAAACAGUGCCCGAUGCCGUG---A---GUCACCACUUGGAUUUGGGUCUGCCGCAGACGGAACCAGUGGAGGAACCACUGAUCCAGCCCAAAAAGGCAUAU (((((.(....)((.((((((..(((((---.---.....)))..))..)))))))).)))))...(((..((((((.....)))))).))).(((......))).... ( -37.60) >DroYak_CAF1 2809 103 - 1 AGCGGAGGAAACAGUGCCCGAUGCCGUG---A---GUCACCAUUUGGAUUUGGGCCUGCCGCAAACGGAGCCUGUGGAGGAACCACUGAUCCAUCCCAAAAAGGCAUAU .((((.(....)((.((((((((.(...---.---).))((....))..)))))))).)))).......((((.(((.(((........)))...)))...)))).... ( -34.50) >consensus AGCGGAGGAAACAGUGCCCGAUGCUGUG___A___GUCACCAUUUGGAUUUGGGUCUGCCGCAAACGGAGCCAGUGGUGGAACCACUGAUCCAGCCCAAAAAGGCAUAU .((((.(((..(((..((.((((.((...........)).)))).))..)))..))).))))....(((..((((((.....)))))).))).(((......))).... (-23.74 = -26.05 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:27 2006