Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,794,147 – 3,794,243 |
Length | 96 |
Max. P | 0.919092 |
Location | 3,794,147 – 3,794,243 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.40 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -16.43 |
Energy contribution | -16.77 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.14 |
Mean z-score | -1.69 |
Structure conservation index | 0.66 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3794147 96 - 22224390 UUCUGUCAGCUAGUGAUGUGAAA-AAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUAG-----------------------UUUAGCGACUUUUCGAUACUUGUCAAGCAUUGGUCGUUA ........(((((((...(((.(-(((((((((((((.....))))))))))))))((-----------------------(....(((....)))..)))..)))..)))))))..... ( -26.00) >DroSim_CAF1 15 97 - 1 UUCUGUCAGCUAGUGAUGUAAAAAAAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUCG-----------------------UUAAGCGACCUUUCGAUACUUGUCAAGCAUUGGUCGUUA ....((((.....)))).(((..((((((((((((((.....))))))))))))))..-----------------------)))(((((((....(((....))).......))))))). ( -26.40) >DroYak_CAF1 59 118 - 1 UUCUGCCAGCUAGUGAUGUCAAA--AAACACCGAUGCAUCGGCUAUCGAUAUUUUUCGAUUUUUUUCCUUUAAGAGCAACGCUUAGUGACGUAUCGAUAUUUUCAAAACAUCGGUCGUUA ........(((((((.((((...--.....((((....))))..(((((......))))).............)).)).))).))))((((.((((((.((.....)).)))))))))). ( -22.80) >consensus UUCUGUCAGCUAGUGAUGUAAAA_AAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUCG_______________________UUUAGCGACCUUUCGAUACUUGUCAAGCAUUGGUCGUUA ..........................(((((((((((..((((((((((............................................))))))))))....)))))))).))). (-16.43 = -16.77 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006