Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,783,396 – 3,783,498 |
Length | 102 |
Max. P | 0.588243 |
Location | 3,783,396 – 3,783,498 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -20.50 |
Energy contribution | -20.62 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.72 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3783396 102 + 22224390 AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAGGGGGACGACGA------------GGACGAGACCUCGUCCAACGAUGAUUACGAAGA------GCUGCUAAGCCUAGUACUGCGUC .((((((((.....(((.((((....)))).....(....).....------------))).....))))))))...((((..(((..((.------(((....))))).)))...)))) ( -35.10) >DroSec_CAF1 36532 102 + 1 AGGACGAGGGCAUAUCCAUUACGGAAGUAAAUCAGGAGGACGACGA------------GGACGAGACCUCGUCCAACGAUGAGUACGAAGA------GCUGAUAAGCCUAGUACUGCGCC .((((((((.....(((.((((....))))....)))(..(.....------------)..)....))))))))..((...(((((..((.------(((....))))).))))).)).. ( -34.50) >DroEre_CAF1 37458 120 + 1 AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAUGAGGACGACGAGGAUAACGAGCAGGAUGAGAUCUUGUCCAACGAAGAGGAGGAAGACGAAGGUCUGCUAAAUAUGGUACUGCGUC .(((((((..(.(((((.((((....))))(((....(.....)...)))........))))).)..))))))).(((.((.......((((....))))((((....)))).)).))). ( -33.20) >DroYak_CAF1 38160 120 + 1 AGGACGAGGGCAUAUCCGUUACGGAAAUAAAGCAGGAGGACGACGAAAUGAACGAAGAGGAGGAUACCACGUCCAACGAAGGGGACGAAGAGGAAGGUCUGCUAAACAUGGUACUGCGUC ..((((((..(...((((...)))).....((((((.(((((.((.......))....((......)).)))))......(....)...........)))))).......)..)).)))) ( -28.30) >consensus AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAGGAGGACGACGA____________GGACGAGACCUCGUCCAACGAAGAGGACGAAGA______GCUGCUAAACAUAGUACUGCGUC .((((((((.....(((.((((....)))).......(.....)..............))).....)))))))).........................(((((....)))))....... (-20.50 = -20.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:23 2006