Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,773,034 – 3,773,137 |
Length | 103 |
Max. P | 0.678171 |
Location | 3,773,034 – 3,773,137 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.73 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -13.24 |
Energy contribution | -13.64 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.84 |
Structure conservation index | 0.49 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3773034 103 + 22224390 --------CCUCGCCGUAUUCUCAACUUGUUCACCACACUUGUGUUUUAUUCGCAAUGUCCUGCCCACCAGGAACAGGACAAUCGAGAGCGAAAUCGGUAGUGGAAGCGAA --------..((((.((.......)).......((((..(((((.......)))))(((((((.((....))..)))))))(((((........))))).))))..)))). ( -27.50) >DroSec_CAF1 26271 109 + 1 CAGCUUCCACUCGCCGUAUUCUCCACUCGUUCUCCACACUCG--UUUCAUUCGCAAUGUCCUGCCCACCAAGACCAAGACAUUCGAGAGCGAAAUCGGUAGUGGAAGCGCA ..(((((((((.((((.(((......((((((((.((....)--).......(.((((((.((..(.....)..)).)))))))))))))))))))))))))))))))... ( -35.60) >DroSim_CAF1 24082 103 + 1 ------CCACUCGCCGUAUUCUCCACUCGUUCUCCACACUCG--UUUCAUUCGCAAUGUCCUGCCCACCAAGACCAAGACAUUCGAGAGCGAAAUCGGUAGUGGAAGCGCA ------(((((.((((.(((......((((((((.((....)--).......(.((((((.((..(.....)..)).)))))))))))))))))))))))))))....... ( -26.00) >DroEre_CAF1 27215 96 + 1 ------CC-CUCACAUUUUUCUACAUUUU-U-----CACUUG--UUUCAUUCGCAAUGUCCUGCCCACUAAGGACAGGACAUCCGACAGCGAAAUCGGUAGUGGAAGCGCA ------..-.................(((-(-----((((..--.....(((((.((((((((.((.....)).))))))))......)))))......)))))))).... ( -24.72) >DroYak_CAF1 28186 96 + 1 ------CC-UCUACAAUUUUCUACAUUUU-U-----CACUUG--UUUUAUUCGCAAUAUCCUGCCCACCAAGGUUAGGACAUCCGACUGCGAUGUCGGCAGUGGAAGCGCA ------..-........(((((((.....-.-----......--..............(((((.((.....)).)))))...(((((......)))))..))))))).... ( -21.30) >consensus ______CC_CUCGCCGUAUUCUCCACUUGUUC_CCACACUUG__UUUCAUUCGCAAUGUCCUGCCCACCAAGAACAGGACAUUCGAGAGCGAAAUCGGUAGUGGAAGCGCA .................................................(((((.((((((((..(.....)..))))))))((((........))))..)))))...... (-13.24 = -13.64 + 0.40)
Location | 3,773,034 – 3,773,137 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.73 |
Mean single sequence MFE | -33.47 |
Consensus MFE | -19.72 |
Energy contribution | -19.28 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.24 |
Mean z-score | -1.77 |
Structure conservation index | 0.59 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3773034 103 - 22224390 UUCGCUUCCACUACCGAUUUCGCUCUCGAUUGUCCUGUUCCUGGUGGGCAGGACAUUGCGAAUAAAACACAAGUGUGGUGAACAAGUUGAGAAUACGGCGAGG-------- ((((((........(((((((((..(((..((((((((.((....))))))))))...)))......(((....))))))))...)))).......)))))).-------- ( -31.16) >DroSec_CAF1 26271 109 - 1 UGCGCUUCCACUACCGAUUUCGCUCUCGAAUGUCUUGGUCUUGGUGGGCAGGACAUUGCGAAUGAAA--CGAGUGUGGAGAACGAGUGGAGAAUACGGCGAGUGGAAGCUG ...(((((((((.(((.((((((((((((((((((((.((.....)).))))))))).)))......--.....((.....))))))))))....)))..))))))))).. ( -43.90) >DroSim_CAF1 24082 103 - 1 UGCGCUUCCACUACCGAUUUCGCUCUCGAAUGUCUUGGUCUUGGUGGGCAGGACAUUGCGAAUGAAA--CGAGUGUGGAGAACGAGUGGAGAAUACGGCGAGUGG------ ..((((((((((.....((((((.(((((((((((((.((.....)).)))))))))..........--)))).))))))....))))))......)))).....------ ( -34.20) >DroEre_CAF1 27215 96 - 1 UGCGCUUCCACUACCGAUUUCGCUGUCGGAUGUCCUGUCCUUAGUGGGCAGGACAUUGCGAAUGAAA--CAAGUG-----A-AAAAUGUAGAAAAAUGUGAG-GG------ ....((((((((((...(((((((.(((((((((((((((.....)))))))))))).)))......--..))))-----)-))...)))).....)).)))-).------ ( -35.00) >DroYak_CAF1 28186 96 - 1 UGCGCUUCCACUGCCGACAUCGCAGUCGGAUGUCCUAACCUUGGUGGGCAGGAUAUUGCGAAUAAAA--CAAGUG-----A-AAAAUGUAGAAAAUUGUAGA-GG------ ..(((.((((((((.(....)))))).)))((((((..((.....))..))))))..))).......--......-----.-....................-..------ ( -23.10) >consensus UGCGCUUCCACUACCGAUUUCGCUCUCGAAUGUCCUGGUCUUGGUGGGCAGGACAUUGCGAAUGAAA__CAAGUGUGG_GAACAAGUGGAGAAUACGGCGAG_GG______ ........((((......(((((.....(((((((((.(((....))))))))))))))))).........)))).................................... (-19.72 = -19.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:22 2006