Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,768,729 – 3,768,828 |
Length | 99 |
Max. P | 0.958903 |
Location | 3,768,729 – 3,768,828 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 73.21 |
Mean single sequence MFE | -26.96 |
Consensus MFE | -16.16 |
Energy contribution | -16.80 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.28 |
Mean z-score | -1.97 |
Structure conservation index | 0.60 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3768729 99 + 22224390 ACACAAUUGUACAUCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGUUGGAAGCCAUGUUCCCAAGGGCUUUCACUUCGCGGGGGCUCCAA ....((((((.....))))))....((((((..(((((((((((((....(((.((((.(((...))).)))).))))))))))..)))))))))))). ( -38.70) >DroSec_CAF1 22200 87 + 1 ACACAAUUGUACACCAAAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUACCGAAGAAA------------UGGGCUCUCACAUCGCGGGGGCUCCAG .........................((((((..((((((.((((.((....(((......------------)))..))))))...)))))))))))). ( -24.30) >DroSim_CAF1 19978 76 + 1 ACACAAUUGUACACCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAG-----------AAA------------UGGGUUCUCACAUCGCGGGGGCUCCAA ....((((((.....))))))....((((((..((((((.((((.(-----------((.------------....)))))))...)))))))))))). ( -25.80) >DroEre_CAF1 22867 99 + 1 ACUGAACUGAACACCACAAUUAAGAAGGAGUUUUCCCGCAGUGAAGAAAUGCUGAUUGAAACCAUAUUCCCAAGGGUUUUCGCUUCACGGGGGCUUCAA ..........................(((((..(((((.((((((((((((.((........))))))((....))))))))))...)))))))))).. ( -19.50) >DroYak_CAF1 23916 95 + 1 ----AACCGAACAUCACAAUUGAGAAGUAGUUUUCCCGCAGUGGGGAAAUGCUGAUUGAAGCCAUCUUCCCAAGGGUUUUCGCUUCACGGGAGCUCCAA ----..(((....(((....)))((((..(....(((....((((((.(((((......)).))).)))))).)))...)..)))).)))......... ( -26.50) >consensus ACACAAUUGUACACCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGAUGGAA_CCAU_UUCCCAAGGGUUUUCACUUCGCGGGGGCUCCAA ..........................(((((..(((((((((((((...............................)))))))..))))))))))).. (-16.16 = -16.80 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006