Locus 1264

Sequence ID X_DroMel_CAF1
Location 3,765,050 – 3,765,155
Length 105
Max. P 0.716972
window2030

overview

Window 0

Location 3,765,050 – 3,765,155
Length 105
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 88.04
Mean single sequence MFE -32.20
Consensus MFE -26.14
Energy contribution -27.20
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.81
SVM decision value 0.39
SVM RNA-class probability 0.716972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3765050 105 - 22224390
GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCGAAGGAGCGAGGCUUUGUUGCCGCAUUCCCGUUCCUCUUCGGCCGACCCUCGGCUUCCAUUUCCCAUUUCCC-------------
......(((((.((..((((((.(((((..(((....)))...)))))....)))))).....)).)))))..(((((.....))))).................------------- ( -31.90)
>DroSec_CAF1 18707 105 - 1
GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCGUUCCUCUUCGGUCGACCCUCCGCUUCCAUUUCCCAUUUUCC-------------
.....((((((((...((((((((((((..(((....)))...))))...))))))))...(((........))).........)))))))).............------------- ( -32.00)
>DroEre_CAF1 19109 118 - 1
GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCAUUCCUCUUUUGCCAACAAUCCGCUUCCAUUUCCCAUUUUCCAUUUCCCAUCCCA
.....((((((((.((((.(((.(((..((......((((.(.((((....)))).).))))...))..)))..)))..)))).)))))))).......................... ( -32.50)
>DroYak_CAF1 20356 105 - 1
GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCUCAUUCCCGUUCCUCUUUCGCCAACCCUCCGCUUCCAUUUCCCAUUUCCC-------------
.....((((((((......(((.(((..((......((((.((((((....)))))).))))...))..)))..))).......)))))))).............------------- ( -32.42)
>consensus
GCACCUGGAGGCGCAUUGCGGCUAAGUUGAUUCCAAGGAGCGAGGCUUUGUAGCCGCAUUCCCGUUCCUCUUCGGCCAACCCUCCGCUUCCAUUUCCCAUUUCCC_____________
.....((((((((.....((((((((..((......((((.(.(((......))).).))))...))..))).)))))......)))))))).......................... (-26.14 = -27.20 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:19 2006